Factsheet for TraesCS1A01G308500.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2B01G351300.1
TraesCS2D01G332000.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G238200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G51510.1	TraesCS2A01G331000.1	AT4G26455.1	21798944
AT3G51510.1	TraesCS2B01G351300.1	AT4G26455.1	21798944
AT3G51510.1	TraesCS2D01G332000.1	AT4G26455.1	21798944
AT3G51510.1	TraesCS5A01G257000.1	AT4G26455.1	21798944
AT3G51510.1	TraesCS5B01G256500.1	AT4G26455.1	21798944
AT3G51510.1	TraesCS5D01G265600.1	AT4G26455.1	21798944
AT3G51510.1	TraesCS7A01G240200.1	AT4G26455.1	21798944
AT3G51510.1	TraesCS7B01G135800.1	AT4G26455.1	21798944
AT3G51510.1	TraesCS7D01G238200.1	AT4G26455.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G307900.1	Wheat	plastid	94.74	95.29
TraesCS1B01G319200.1	Wheat	plastid	92.98	93.53
HORVU1Hr1G068500.3	Barley	plastid	76.02	76.92
HORVU0Hr1G001170.1	Barley	plastid	83.63	73.33
VIT_04s0044g00320.t01	Wine grape	vacuole	35.09	65.93
Os05t0490900-01	Rice	plastid	60.82	60.47
Zm00001d038542_P001	Maize	plastid	59.06	59.76
KRG94039	Soybean	cytosol	35.09	52.63
EES19726	Sorghum	plastid	54.97	51.93
CDY33273	Canola	plastid	49.12	49.12
CDY16301	Canola	plastid	49.12	49.12
Bra038904.1-P	Field mustard	plastid	49.12	49.12
KRH67281	Soybean	plastid	50.29	48.59
AT3G51510.1	Thale cress	plastid	50.29	47.51
GSMUA_Achr10P...	Banana	plastid	47.37	44.02
CDX73716	Canola	plastid	47.37	43.55
CDX78010	Canola	plastid	46.78	43.01
Bra036793.1-P	Field mustard	plastid	46.78	43.01
Solyc02g068270.2.1	Tomato	extracellular, plastid	53.22	42.33
KRG95603	Soybean	plastid	42.11	38.92

Protein Annotations

EnsemblPlants:TraesCS1A01G308500.1	EnsemblPlantsGene:TraesCS1A01G308500	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009535	GO:GO:0009536	GO:GO:0009579	GO:GO:0016020	PANTHER:PTHR36042
SEG:seg	TMHMM:TMhelix	MapMan:35.2	:	:	:

Description

No Description!

Coordinates

chr1A:-:499735909..499736991

Molecular Weight (calculated)

17798.9 Da

IEP (calculated)

8.811

GRAVY (calculated)

-0.165

Length

171 amino acids

Sequence
(BLAST)

001: MAAAAISLCG SRCVGPSRKP EPRLASQAGA APCATRPSSS RRRLVVAAAK SSGKKADEKV PSWARPGSDE APPWARDEGG ASGQDGEAAQ VPFYAYLLAS
101: AVTAIAAIGS IFEYTNGRAV FGVVGTDSPL YAPILGFFAV TGIPTSGYLW YKAVQTANKD AEEQDRRDGF L

Best Arabidopsis Sequence Match ( AT3G51510.1 )
(BLAST)

001: MAASLTSLPT GFCLSHGDEC CNRSPTKSPF PGHHPLAGRR KGHLLHYERS TVRRLVVTAA TEGSKKSKES EPSWANPDSD EPPPWARNEG RSSTSQESFE
101: VPFFVYLLAS AITAIAAIGS VFEYTSKNPV FGILESDSIF YTPVLGFFAL TGIPTSVFLW FKSVEAANKE AQEQDKRDGF L

Arabidopsis Description

AT3g51510/F26O13_150 [Source:UniProtKB/TrEMBL;Acc:Q9SCZ8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.