Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, golgi
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- golgi 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 92.28 | 59.52 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 59.4 | 58.61 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 58.05 | 56.17 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 95.3 | 55.69 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 94.63 | 55.29 |
| OQU81760 | Sorghum | nucleus | 59.4 | 41.55 |
| Zm00001d025667_P001 | Maize | cytosol | 58.39 | 35.66 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 24.16 | 26.09 |
| CDY17403 | Canola | nucleus | 24.16 | 26.09 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 23.15 | 24.73 |
| Solyc07g066170.2.1 | Tomato | nucleus | 25.84 | 22.99 |
| CDY24192 | Canola | plastid | 20.13 | 19.8 |
| GSMUA_Achr10P... | Banana | cytosol | 29.53 | 17.46 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 29.53 | 16.36 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 28.52 | 15.57 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 20.47 | 15.25 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 20.13 | 15.04 |
| AT5G56210.1 | Thale cress | nucleus | 25.17 | 14.73 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 28.86 | 14.48 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 28.86 | 14.45 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 20.13 | 14.29 |
| PGSC0003DMT400022426 | Potato | nucleus | 27.18 | 13.82 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 20.47 | 13.8 |
| CDX82542 | Canola | plastid | 20.13 | 13.54 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 27.85 | 13.52 |
| PGSC0003DMT400056956 | Potato | nucleus | 26.85 | 13.38 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 22.82 | 13.13 |
| KRH56393 | Soybean | cytosol | 25.84 | 13.12 |
| CDX94330 | Canola | nucleus | 21.48 | 13.03 |
| KRH62532 | Soybean | endoplasmic reticulum | 25.17 | 12.82 |
| AT4G26455.1 | Thale cress | nucleus | 20.81 | 12.68 |
| CDX89333 | Canola | nucleus | 20.47 | 12.32 |
| Bra026434.1-P | Field mustard | nucleus | 20.47 | 12.32 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G351300.1 | EnsemblPlantsGene:TraesCS2B01G351300 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF7 | SEG:seg |
| TMHMM:TMhelix | MapMan:20.4.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr2B:-:499549750..499552582
Molecular Weight (calculated)
34045.2 Da
IEP (calculated)
4.157
GRAVY (calculated)
-0.560
Length
298 amino acids
Sequence
(BLAST)
(BLAST)
001: MSMSYDGSQS EDRQSEEVQS AYKKFSAGDE DAIRGFVNLD ETEEQNEENE WSWVPQEEDP LAESASSLEK AQEVLEKFFK KNEDLESEML KLSELGKGFV
101: AEDSHDGNIG LPYIEADVLG MNQKMECLEL KLKEASDTIT EKDSRLSELQ LLINSAHTPT LQTEPVNIDE LEAELESHLQ DKIEAEIQCL VMVKARQNWQ
201: ARAEDQIALD EHRLSTGDDM RMLLKLQDTE KKIVMLKEQV DRLEAHEKEL SVTTEVLRMQ SKTFKIGLFG LLQLIMLCLS LKMFFAQDSA RFDDLVPT
101: AEDSHDGNIG LPYIEADVLG MNQKMECLEL KLKEASDTIT EKDSRLSELQ LLINSAHTPT LQTEPVNIDE LEAELESHLQ DKIEAEIQCL VMVKARQNWQ
201: ARAEDQIALD EHRLSTGDDM RMLLKLQDTE KKIVMLKEQV DRLEAHEKEL SVTTEVLRMQ SKTFKIGLFG LLQLIMLCLS LKMFFAQDSA RFDDLVPT
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.