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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 3
  • cytosol 1
  • mitochondrion 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:nucleus
Any Predictor:cytosol, mitochondrion, nucleus, plasma membrane
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:plasma membrane
YLoc:nucleus
 nucleus: 28394025
msms PMID: 28394025 doi
AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g008820.2.1
Solyc01g009310.2.1
Solyc01g050070.2.1
Solyc01g079680.2.1
Solyc02g065660.2.1
Solyc02g068130.2.1
Solyc02g069610.2.1
Solyc02g082170.1.1
Solyc02g093090.1.1
Solyc02g094140.2.1
Solyc03g007340.2.1
Solyc03g116990.1.1
Solyc04g078380.1.1
Solyc06g010060.1.1
Solyc06g060760.2.1
Solyc06g074090.2.1
Solyc06g075190.1.1
Solyc07g005180.2.1
Solyc07g066170.2.1
Solyc09g065240.2.1
Solyc09g074910.1.1
Solyc10g005150.1.1
Solyc10g005160.1.1
Solyc10g005170.1.1
Solyc10g078580.1.1
Solyc11g005000.1.1
Solyc11g064790.1.1
Solyc11g065100.1.1
Solyc11g073240.1.1
Solyc12g099770.1.1
Solyc12g099960.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT4G26455.1 Solyc12g099960.1.1 AT1G16790.1 21798944
AT4G26455.1 Solyc02g082170.1.1 AT1G30840.1 21798944
AT4G26455.1 Solyc10g005150.1.1 AT1G30840.1 21798944
AT4G26455.1 Solyc10g005160.1.1 AT1G30840.1 21798944
AT4G26455.1 Solyc10g005170.1.1 AT1G30840.1 21798944
AT4G26455.1 Solyc04g078380.1.1 AT1G47200.1 17600715
AT4G26455.1 Solyc01g009310.2.1 AT1G50430.1 21798944
AT4G26455.1 Solyc06g074090.2.1 AT1G50430.1 21798944
AT4G26455.1 Solyc01g050070.2.1 AT1G55535.1 21798944
AT4G26455.1 Solyc11g005000.1.1 AT1G77350.1 21798944
AT4G26455.1 Solyc01g008820.2.1 AT2G03120.1 21798944
AT4G26455.1 Solyc11g064790.1.1 AT2G03120.1 21798944
AT4G26455.1 Solyc07g005180.2.1 AT2G24290.1 21798944
AT4G26455.1 Solyc09g074910.1.1 AT2G47770.1 21798944
AT4G26455.1 Solyc10g078580.1.1 AT3G13520.1 21798944
AT4G26455.1 Solyc02g068130.2.1 AT3G27080.1 21798944
AT4G26455.1 Solyc02g094140.2.1 AT3G27080.1 21798944
AT4G26455.1 Solyc11g073240.1.1 AT3G43520.1 21798944
AT4G26455.1 Solyc09g065240.2.1 AT3G63200.1 21798944
AT4G26455.1 Solyc06g060760.2.1 AT4G17340.1 21798944
AT4G26455.1 Solyc07g066170.2.1 AT4G26455.1 17600715
AT4G26455.1 Solyc02g069610.2.1 AT5G01430.1 21798944
AT4G26455.1 Solyc02g065660.2.1 AT5G11390.1 18591351
AT4G26455.1 Solyc11g065100.1.1 AT5G12390.1 21798944
AT4G26455.1 Solyc12g099770.1.1 AT5G12390.1 21798944
AT4G26455.1 Solyc06g075190.1.1 AT5G18150.1 21798944
AT4G26455.1 Solyc01g079680.2.1 AT5G19320.1 17600715
AT4G26455.1 Solyc03g007340.2.1 AT5G24130.1 21798944
AT4G26455.1 Solyc04g078380.1.1 AT5G43070.1 17600715
AT4G26455.1 Solyc07g066170.2.1 AT5G56210.1 17600715
AT4G26455.1 Solyc03g116990.1.1 AT5G60460.1 21798944
AT4G26455.1 Solyc06g010060.1.1 AT5G60460.1 21798944
AT4G26455.1 Solyc02g093090.1.1 AT5G67210.1 21798944
AT5G56210.1 Solyc04g078380.1.1 AT1G47200.1 17600715
AT5G56210.1 Solyc07g066170.2.1 AT4G26455.1 17600715
AT5G56210.1 Solyc02g065660.2.1 AT5G11390.1 18591351
AT5G56210.1 Solyc01g079680.2.1 AT5G19320.1 17600715
AT5G56210.1 Solyc04g078380.1.1 AT5G43070.1 17600715
AT5G56210.1 Solyc07g066170.2.1 AT5G56210.1 17600715
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400056956 Potato nucleus 88.66 49.67
Bra002835.1-P Field mustard cytosol, golgi, nucleus 26.27 31.88
CDY17403 Canola nucleus 25.97 31.52
CDY32806 Canola cytosol, golgi, nucleus 25.37 30.47
TraesCS2B01G351300.1 Wheat cytosol, golgi, nucleus 22.99 25.84
Zm00001d003334_P001 Maize cytosol, nucleus, plastid 23.58 25.65
Os04t0471300-01 Rice cytosol, golgi, nucleus 21.19 23.51
CDY24192 Canola plastid 20.9 23.1
VIT_19s0015g01790.t01 Wine grape nucleus 41.19 22.48
KRH62532 Soybean endoplasmic reticulum 37.01 21.2
KRH56393 Soybean cytosol 34.93 19.93
GSMUA_Achr10P... Banana cytosol 29.55 19.64
OQU81760 Sorghum nucleus 24.18 19.01
AT5G56210.1 Thale cress nucleus 26.87 17.68
CDY43354 Canola cytosol, golgi, nucleus 20.9 17.54
Bra039387.1-P Field mustard cytosol, golgi, nucleus, plastid 20.3 17.0
Zm00001d025667_P001 Maize cytosol 24.48 16.8
AT4G26455.1 Thale cress nucleus 24.48 16.77
Bra026434.1-P Field mustard nucleus 24.78 16.77
HORVU2Hr1G081800.3 Barley cytosol, nucleus 22.99 16.67
CDX89333 Canola nucleus 24.48 16.57
CDX75706 Canola cytosol, golgi, nucleus 20.3 16.19
GSMUA_Achr3P04120_001 Banana nucleus 28.66 16.16
TraesCS7B01G135800.1 Wheat cytosol, golgi, nucleus 25.67 15.99
GSMUA_Achr4P01630_001 Banana cytosol, golgi, nucleus 28.36 15.97
CDX94330 Canola nucleus 23.28 15.89
TraesCS2A01G331000.1 Wheat cytosol 24.18 15.88
EES14314 Sorghum nucleus 23.88 15.81
Zm00001d020879_P001 Maize cytosol, golgi, nucleus, plastid 18.81 15.71
Zm00001d005997_P002 Maize plastid 25.07 15.61
TraesCS5D01G265600.1 Wheat nucleus 25.67 15.58
CDX82542 Canola plastid 20.6 15.58
TraesCS5B01G256500.1 Wheat cytosol, golgi, nucleus, plastid 25.37 15.57
TraesCS2D01G332000.1 Wheat cytosol 23.58 15.49
TraesCS7A01G240200.1 Wheat cytosol 25.07 15.44
TraesCS5A01G257000.1 Wheat cytosol, golgi, nucleus, plastid 25.07 15.41
Bra001502.1-P Field mustard nucleus, plastid 20.3 15.38
Os09t0481300-01 Rice nucleus 24.18 15.37
HORVU5Hr1G071910.1 Barley nucleus 25.07 15.33
EER96942 Sorghum cytosol, golgi, nucleus, plastid 24.48 15.13
TraesCS7D01G238200.1 Wheat cytosol 24.18 15.08
Os08t0497900-01 Rice nucleus 20.0 14.5
HORVU7Hr1G048940.3 Barley cytosol 24.18 14.19
AT3G13360.2 Thale cress extracellular, plasma membrane, vacuole 19.7 12.74
Protein Annotations
EnsemblPlants:Solyc07g066170.2.1EnsemblPlantsGene:Solyc07g066170.2GO:GO:0005575GO:GO:0016020GO:GO:0016021ncoils:Coil
PANTHER:PTHR34562PANTHER:PTHR34562:SF1SEG:segTMHMM:TMhelixUniParc:UPI000276B281UniProt:K4CHU3
MapMan:20.4.2.1.2:::::
Description
No Description!
Coordinates
chr7:-:67652618..67656795
Molecular Weight (calculated)
37004.8 Da
IEP (calculated)
4.278
GRAVY (calculated)
-0.567
Length
335 amino acids
Sequence
(BLAST)
001: MNEKGDFATS NGTKGERSMN YDEESSDEAQ DRERPIGEEL GAGLERGNDR ESENVSKEDL AAESPWDVNE EKSENHGSST DHEPLTESIF NFHAAQEALA
101: SEIQKFKEIG KDTNFGHSLE DVGIPSNFTS DDSDFPRSST SVLSQNRDGA QSSLNSLESE VYSLKQNILL LQNQVQEAAD LAKSKEARVT ELEAILSSSS
201: KSEEETTEGE FESLFRLKIE AEVQYVALST TAQKLRSAAV YQLTLLEEQK TLASEQAQMV HVLGDAEAKA VVLKTQTKKL ETYCEDLAST AEKLKLQKKV
301: CKYSSCFFIQ LVLLAVVVGL FLMQISPDHA ELVPT
Best Arabidopsis Sequence Match ( AT5G56210.1 )
(BLAST)
001: MDLESESSVL ESVEDNNGLI GDLDKELNSP VETSPLISKG FGLRKWKRRL RRDLVKDDTS VSMENSKALK RVLSGLVDPN AKQMHLPGPE VRQDSVGSVG
101: SVNSVVGFVM GGESYGNGLA FAAGVDSDNS EDRSSTMSHS WDKHRGKVSG GKSVISSGDS SQQRKSSVEK SNKLRGERIK IEKENSHSSM ESADSRSSNF
201: VFMQGASYSL SSREQGGRRM MDYDDENSDH DAHTSKRKDN VEEEEEETED YSQGDCVEES QIKSNGSSDN LDPLIVAVNS FQTLQEALQK ELQKFQELGK
301: EEPITSLHDG GESSSCIHAG HEGASEASSS YRFGSEKMGE MELTSLDSEI LNLVNNVEHL EIKLEEAKRI LEVKETQIRE LESTINVSET CNGGTEIGIE
401: DIFQQKVEAE IEYIIFSRSV GNLKRRIKLI EEEKTLGLSK LDKAETKAEN LKNQAQDLQN HCVEITEIQE VECLKKRAFK TTRCLLLQLG LLFILYYSLL
501: PEPEIAVPT
Arabidopsis Description
WIP2WPP domain-interacting protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH18]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.