Factsheet for Solyc03g007340.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 2
mitochondrion 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc06g074170.2.1
Solyc11g068750.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24130.1	Solyc06g074170.2.1	AT5G22290.1	21798944
AT5G24130.1	Solyc11g068750.1.1	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023438	Potato	plasma membrane	53.33	81.16
VIT_16s0050g02650.t01	Wine grape	mitochondrion, plasma membrane	62.86	67.58
KRH53446	Soybean	mitochondrion, plasma membrane	56.51	60.14
CDX80417	Canola	plasma membrane	57.78	57.78
AT5G24130.1	Thale cress	plasma membrane	57.46	57.28
Bra009736.1-P	Field mustard	mitochondrion, plasma membrane	57.14	57.14
CDX88079	Canola	mitochondrion, plasma membrane	57.14	57.14
GSMUA_Achr6P22890_001	Banana	mitochondrion, plasma membrane	48.57	54.26
GSMUA_Achr5P06770_001	Banana	mitochondrion	50.79	53.16
GSMUA_Achr10P...	Banana	mitochondrion	43.81	52.67
Zm00001d016098_P002	Maize	mitochondrion, plasma membrane	47.94	50.17
Os02t0257200-01	Rice	nucleus, plastid	48.25	50.0
TraesCS1B01G461700.1	Wheat	mitochondrion, plasma membrane	41.9	48.89
TraesCS1A01G426800.1	Wheat	mitochondrion, plasma membrane	41.9	48.53
Zm00001d009718_P001	Maize	mitochondrion, plasma membrane	39.68	47.35
HORVU3Hr1G058570.1	Barley	mitochondrion, plasma membrane	46.35	46.79
HORVU3Hr1G026120.1	Barley	mitochondrion, plasma membrane	46.35	46.79
TraesCS3B01G155100.1	Wheat	mitochondrion, plasma membrane	46.35	45.91
KXG22640	Sorghum	mitochondrion, plasma membrane	40.95	45.74
TraesCS3D01G138100.1	Wheat	plasma membrane	46.03	45.6
HORVU5Hr1G032740.1	Barley	mitochondrion, plasma membrane	21.9	45.39
OQU84732	Sorghum	mitochondrion	48.25	45.1
TraesCS3A01G137300.1	Wheat	plasma membrane	45.4	44.83
Os05t0586700-00	Rice	nucleus, plastid	40.63	41.83
HORVU6Hr1G076620.3	Barley	mitochondrion	32.7	39.02
TraesCS1D01G436600.1	Wheat	plastid	41.9	36.67
HORVU1Hr1G093170.2	Barley	cytosol, plastid	25.71	30.0

Protein Annotations

EnsemblPlants:Solyc03g007340.2.1	EnsemblPlantsGene:Solyc03g007340.2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR34967
PANTHER:PTHR34967:SF1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0002767F76	UniProt:K4BEF7	MapMan:35.2

Description

No Description!

Coordinates

chr3:-:1902871..1905696

Molecular Weight (calculated)

35108.5 Da

IEP (calculated)

9.493

GRAVY (calculated)

0.249

Length

315 amino acids

Sequence
(BLAST)

001: MVKLASAREM RLYGPRLTGN RFEYINAGLY LFATILLAGG FVAQISKEQL SGLVLLQIAL AVIVVVNVHD LLAHLAGIDY RFLLLGFDPQ LALVEFAVPV
101: VHSVGTILNF IAILFLFTQA EKGYGSHKME KQAVSLLIAG PALWLLGSIH NSCQIYERAD GHVQILQESV NIPFLLGSLL FLVGSLLNWR EQSRYAHHGL
201: KLLSEDWMLF GLFGSLLLFI GGLMNVVKVF KMQQMSGLRL EKLRGGAQDR LIQEREGQMP LLIEEQRRRR QSSGEEGQMP LLVEEQSRRK KAPVKETTST
301: TIAPTPYKDV LVGQA

Best Arabidopsis Sequence Match ( AT5G24130.1 )
(BLAST)

001: MVKLATAREI RTYGPRLGRS RAEYINAGLY LFATVVLIGG FTATGFSWEP RSGLVLILLA LVLITAVNVH DLVAHLAGID YRLRLMEYDL QLGLVEFAVP
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI

Arabidopsis Description

At5g24130 [Source:UniProtKB/TrEMBL;Acc:Q9FL61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.