Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 1
- plasma membrane 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX88079 | Canola | mitochondrion, plasma membrane | 86.71 | 86.98 |
| Bra009736.1-P | Field mustard | mitochondrion, plasma membrane | 86.71 | 86.98 |
| CDX80417 | Canola | plasma membrane | 83.23 | 83.49 |
| VIT_16s0050g02650.t01 | Wine grape | mitochondrion, plasma membrane | 56.01 | 60.41 |
| Solyc03g007340.2.1 | Tomato | mitochondrion, plasma membrane | 57.28 | 57.46 |
| KRH53446 | Soybean | mitochondrion, plasma membrane | 53.8 | 57.43 |
| GSMUA_Achr6P22890_001 | Banana | mitochondrion, plasma membrane | 47.47 | 53.19 |
| GSMUA_Achr5P06770_001 | Banana | mitochondrion | 49.37 | 51.83 |
| GSMUA_Achr10P... | Banana | mitochondrion | 42.41 | 51.15 |
| PGSC0003DMT400023438 | Potato | plasma membrane | 33.23 | 50.72 |
| Os02t0257200-01 | Rice | nucleus, plastid | 46.52 | 48.36 |
| Zm00001d009718_P001 | Maize | mitochondrion, plasma membrane | 39.56 | 47.35 |
| Zm00001d016098_P002 | Maize | mitochondrion, plasma membrane | 44.3 | 46.51 |
| HORVU3Hr1G058570.1 | Barley | mitochondrion, plasma membrane | 45.57 | 46.15 |
| HORVU3Hr1G026120.1 | Barley | mitochondrion, plasma membrane | 45.57 | 46.15 |
| KXG22640 | Sorghum | mitochondrion, plasma membrane | 40.82 | 45.74 |
| TraesCS1B01G461700.1 | Wheat | mitochondrion, plasma membrane | 38.61 | 45.19 |
| TraesCS3B01G155100.1 | Wheat | mitochondrion, plasma membrane | 44.94 | 44.65 |
| TraesCS3A01G137300.1 | Wheat | plasma membrane | 44.62 | 44.2 |
| TraesCS1A01G426800.1 | Wheat | mitochondrion, plasma membrane | 37.97 | 44.12 |
| TraesCS3D01G138100.1 | Wheat | plasma membrane | 44.3 | 44.03 |
| HORVU5Hr1G032740.1 | Barley | mitochondrion, plasma membrane | 20.57 | 42.76 |
| OQU84732 | Sorghum | mitochondrion | 45.25 | 42.43 |
| Os05t0586700-00 | Rice | nucleus, plastid | 40.51 | 41.83 |
| HORVU6Hr1G076620.3 | Barley | mitochondrion | 30.06 | 35.98 |
| TraesCS1D01G436600.1 | Wheat | plastid | 38.61 | 33.89 |
| HORVU1Hr1G093170.2 | Barley | cytosol, plastid | 23.1 | 27.04 |
Protein Annotations
| MapMan:35.2 | EntrezGene:832478 | UniProt:A0A178UCZ8 | ProteinID:AED93260.1 | EMBL:AK118424 | ArrayExpress:AT5G24130 |
| EnsemblPlantsGene:AT5G24130 | RefSeq:AT5G24130 | TAIR:AT5G24130 | RefSeq:AT5G24130-TAIR-G | EnsemblPlants:AT5G24130.1 | TAIR:AT5G24130.1 |
| ProteinID:BAB11573.1 | EMBL:BT005307 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0008150 |
| GO:GO:0016020 | GO:GO:0016021 | RefSeq:NP_197801.1 | ProteinID:OAO91500.1 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0025022 | PANTHER:PTHR34967 | PANTHER:PTHR34967:SF1 | UniProt:Q9FL61 |
| TMHMM:TMhelix | UniParc:UPI000000C5DE | SEG:seg | : | : | : |
Description
At5g24130 [Source:UniProtKB/TrEMBL;Acc:Q9FL61]
Coordinates
chr5:+:8161928..8164066
Molecular Weight (calculated)
34683.6 Da
IEP (calculated)
8.760
GRAVY (calculated)
0.381
Length
316 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLATAREI RTYGPRLGRS RAEYINAGLY LFATVVLIGG FTATGFSWEP RSGLVLILLA LVLITAVNVH DLVAHLAGID YRLRLMEYDL QLGLVEFAVP
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.