CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 1
plasma membrane 4
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	mitochondrion, plasma membrane, plastid
BaCelLo:	plastid
MultiLoc:	plasma membrane
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX70995
CDX88803
CDX92368
CDY09128
CDY35676

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24130.1	CDX70995	AT5G22290.1	21798944
AT5G24130.1	CDX88803	AT5G22290.1	21798944
AT5G24130.1	CDX92368	AT5G22290.1	21798944
AT5G24130.1	CDY09128	AT5G22290.1	21798944
AT5G24130.1	CDY35676	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX88079	Canola	mitochondrion, plasma membrane	90.16	90.16
AT5G24130.1	Thale cress	plasma membrane	83.49	83.23
VIT_16s0050g02650.t01	Wine grape	mitochondrion, plasma membrane	57.46	61.77
Solyc03g007340.2.1	Tomato	mitochondrion, plasma membrane	57.78	57.78
KRH53446	Soybean	mitochondrion, plasma membrane	53.33	56.76
GSMUA_Achr5P06770_001	Banana	mitochondrion	52.06	54.49
GSMUA_Achr6P22890_001	Banana	mitochondrion, plasma membrane	48.57	54.26
GSMUA_Achr10P...	Banana	mitochondrion	43.81	52.67
PGSC0003DMT400023438	Potato	plasma membrane	34.29	52.17
Zm00001d009718_P001	Maize	mitochondrion, plasma membrane	41.59	49.62
Os02t0257200-01	Rice	nucleus, plastid	46.03	47.7
KXG22640	Sorghum	mitochondrion, plasma membrane	41.27	46.1
Zm00001d016098_P002	Maize	mitochondrion, plasma membrane	43.81	45.85
TraesCS1B01G461700.1	Wheat	mitochondrion, plasma membrane	39.05	45.56
HORVU3Hr1G058570.1	Barley	mitochondrion, plasma membrane	45.08	45.51
HORVU3Hr1G026120.1	Barley	mitochondrion, plasma membrane	45.08	45.51
TraesCS1A01G426800.1	Wheat	mitochondrion, plasma membrane	38.73	44.85
TraesCS3B01G155100.1	Wheat	mitochondrion, plasma membrane	45.08	44.65
TraesCS3D01G138100.1	Wheat	plasma membrane	44.13	43.71
HORVU5Hr1G032740.1	Barley	mitochondrion, plasma membrane	20.95	43.42
TraesCS3A01G137300.1	Wheat	plasma membrane	43.81	43.26
Os05t0586700-00	Rice	nucleus, plastid	41.27	42.48
OQU84732	Sorghum	mitochondrion	45.08	42.14
HORVU6Hr1G076620.3	Barley	mitochondrion	30.16	35.98
TraesCS1D01G436600.1	Wheat	plastid	39.05	34.17
HORVU1Hr1G093170.2	Barley	cytosol, plastid	23.49	27.41

Protein Annotations

EnsemblPlants:CDX80417	EnsemblPlantsGene:GSBRNA2T00133485001	GO:A0A078CUG8	PANTHER:PTHR34967	PANTHER:PTHR34967:SF1	ProteinID:CDX80417
ProteinID:CDX80417.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EDF4D2	MapMan:35.2	:

Description

BnaC07g30270D

Coordinates

chrLK031821:+:313184..314773

Molecular Weight (calculated)

34662.5 Da

IEP (calculated)

8.781

GRAVY (calculated)

0.278

Length

315 amino acids

Sequence
(BLAST)

001: MVKLATAREI RTYGPRLGRS RAEYINAGLY LFATVVLIGG FTATGFSWEP RSGLVLILLA LALITAVNVH DLVAHLAGID YRLKLMEYDL QLGLVEFAVP
101: LVQIAGSVVF FLGILFVFNQ AETKHGNSGR EKHALNMLIA GPLLWVIGSI HNSCQIYERA DSHVQILQQC VHIPFLVGSL LFLVSSLLNS FDQTGSSHTA
201: LKLLGRRWIW LGLSGSICLF VGGLMNVVKV FNFVQITGLR LEKLRGGAQD RLLEEREGYL PLVAEEERIR KMEADQASNR AKTRSHLDSK EGAGAVESVM
301: GTSQTPYKDV LLGQS

Best Arabidopsis Sequence Match ( AT5G24130.1 )
(BLAST)

001: MVKLATAREI RTYGPRLGRS RAEYINAGLY LFATVVLIGG FTATGFSWEP RSGLVLILLA LVLITAVNVH DLVAHLAGID YRLRLMEYDL QLGLVEFAVP
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI

Arabidopsis Description

At5g24130 [Source:UniProtKB/TrEMBL;Acc:Q9FL61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.