Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 1
- mitochondrion 3
- peroxisome 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 3
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G24130.1 | KRH22653 | AT5G22290.1 | 21798944 |
| AT5G24130.1 | KRH26664 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_16s0050g02650.t01 | Wine grape | mitochondrion, plasma membrane | 63.51 | 64.16 |
| Solyc03g007340.2.1 | Tomato | mitochondrion, plasma membrane | 60.14 | 56.51 |
| GSMUA_Achr5P06770_001 | Banana | mitochondrion | 54.73 | 53.82 |
| AT5G24130.1 | Thale cress | plasma membrane | 57.43 | 53.8 |
| Bra009736.1-P | Field mustard | mitochondrion, plasma membrane | 56.76 | 53.33 |
| CDX80417 | Canola | plasma membrane | 56.76 | 53.33 |
| CDX88079 | Canola | mitochondrion, plasma membrane | 56.76 | 53.33 |
| GSMUA_Achr6P22890_001 | Banana | mitochondrion, plasma membrane | 49.32 | 51.77 |
| GSMUA_Achr10P... | Banana | mitochondrion | 45.61 | 51.53 |
| PGSC0003DMT400023438 | Potato | plasma membrane | 33.78 | 48.31 |
| Os02t0257200-01 | Rice | nucleus, plastid | 46.96 | 45.72 |
| Zm00001d016098_P002 | Maize | mitochondrion, plasma membrane | 46.28 | 45.51 |
| HORVU3Hr1G058570.1 | Barley | mitochondrion, plasma membrane | 46.96 | 44.55 |
| HORVU3Hr1G026120.1 | Barley | mitochondrion, plasma membrane | 46.96 | 44.55 |
| Zm00001d009718_P001 | Maize | mitochondrion, plasma membrane | 38.51 | 43.18 |
| TraesCS3B01G155100.1 | Wheat | mitochondrion, plasma membrane | 46.28 | 43.08 |
| TraesCS3D01G138100.1 | Wheat | plasma membrane | 46.28 | 43.08 |
| TraesCS3A01G137300.1 | Wheat | plasma membrane | 45.95 | 42.63 |
| OQU84732 | Sorghum | mitochondrion | 48.31 | 42.43 |
| KXG22640 | Sorghum | mitochondrion, plasma membrane | 40.2 | 42.2 |
| TraesCS1A01G426800.1 | Wheat | mitochondrion, plasma membrane | 38.51 | 41.91 |
| TraesCS1B01G461700.1 | Wheat | mitochondrion, plasma membrane | 38.18 | 41.85 |
| HORVU5Hr1G032740.1 | Barley | mitochondrion, plasma membrane | 20.61 | 40.13 |
| Os05t0586700-00 | Rice | nucleus, plastid | 38.51 | 37.25 |
| HORVU6Hr1G076620.3 | Barley | mitochondrion | 30.41 | 34.09 |
| TraesCS1D01G436600.1 | Wheat | plastid | 38.51 | 31.67 |
| HORVU1Hr1G093170.2 | Barley | cytosol, plastid | 25.0 | 27.41 |
Protein Annotations
| EMBL:ACUP02003463 | EnsemblPlants:KRH53446 | EnsemblPlantsGene:GLYMA_06G125900 | EntrezGene:100808653 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | PANTHER:PTHR34967 | PANTHER:PTHR34967:SF1 | ProteinID:KRH53446 | ProteinID:KRH53446.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI000233948A | UniProt:I1KAN5 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr6:+:10286061..10287786
Molecular Weight (calculated)
33071.3 Da
IEP (calculated)
9.322
GRAVY (calculated)
0.464
Length
296 amino acids
Sequence
(BLAST)
(BLAST)
001: MVKLASARDF RTYGPGLAKN RCEYINAGLY LIASVVLVSG LVAQLSSLAR SGLVLIIAAL GIILLVNLHD FFAHLVGIDF RLPLMAFDLQ LAFVEFAVPV
101: IQMLGTLLTF LGVFFLFIQE EKGYGYFKLE KHALNMLVAG PVLWVIGSIH NSCQIYERAD GHVQILQQCV NVPFLMGSLS FMLSAILNYH EKSKDIHHGL
201: HLLSGTWIWL GIFGSLMFFI GGLTNLIKVF KMQQMNGIRL EKLRGGAHER LLSARERQIP LIMEHQTNIS HQPQETKVTS PLPTPYKDVL IGQTKL
101: IQMLGTLLTF LGVFFLFIQE EKGYGYFKLE KHALNMLVAG PVLWVIGSIH NSCQIYERAD GHVQILQQCV NVPFLMGSLS FMLSAILNYH EKSKDIHHGL
201: HLLSGTWIWL GIFGSLMFFI GGLTNLIKVF KMQQMNGIRL EKLRGGAHER LLSARERQIP LIMEHQTNIS HQPQETKVTS PLPTPYKDVL IGQTKL
001: MVKLATAREI RTYGPRLGRS RAEYINAGLY LFATVVLIGG FTATGFSWEP RSGLVLILLA LVLITAVNVH DLVAHLAGID YRLRLMEYDL QLGLVEFAVP
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI
Arabidopsis Description
At5g24130 [Source:UniProtKB/TrEMBL;Acc:Q9FL61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.