Factsheet for VIT_16s0050g02650.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 3
golgi 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plasma membrane
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	mitochondrion
MultiLoc:	golgi
Plant-mPloc:	plastid
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_06s0080g00970.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G24130.1	VIT_06s0080g00970.t01	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53446	Soybean	mitochondrion, plasma membrane	64.16	63.51
Solyc03g007340.2.1	Tomato	mitochondrion, plasma membrane	67.58	62.86
GSMUA_Achr6P22890_001	Banana	mitochondrion, plasma membrane	57.0	59.22
Bra009736.1-P	Field mustard	mitochondrion, plasma membrane	61.77	57.46
CDX80417	Canola	plasma membrane	61.77	57.46
CDX88079	Canola	mitochondrion, plasma membrane	61.77	57.46
GSMUA_Achr10P...	Banana	mitochondrion	50.51	56.49
GSMUA_Achr5P06770_001	Banana	mitochondrion	57.68	56.15
PGSC0003DMT400023438	Potato	plasma membrane	39.59	56.04
AT5G24130.1	Thale cress	plasma membrane	60.41	56.01
Os02t0257200-01	Rice	nucleus, plastid	52.56	50.66
Zm00001d016098_P002	Maize	mitochondrion, plasma membrane	51.19	49.83
HORVU3Hr1G058570.1	Barley	mitochondrion, plasma membrane	52.22	49.04
HORVU3Hr1G026120.1	Barley	mitochondrion, plasma membrane	52.22	49.04
Zm00001d009718_P001	Maize	mitochondrion, plasma membrane	44.03	48.86
TraesCS3B01G155100.1	Wheat	mitochondrion, plasma membrane	52.56	48.43
TraesCS3A01G137300.1	Wheat	plasma membrane	51.88	47.65
TraesCS3D01G138100.1	Wheat	plasma membrane	51.54	47.48
TraesCS1A01G426800.1	Wheat	mitochondrion, plasma membrane	43.0	46.32
KXG22640	Sorghum	mitochondrion, plasma membrane	44.03	45.74
TraesCS1B01G461700.1	Wheat	mitochondrion, plasma membrane	41.98	45.56
HORVU5Hr1G032740.1	Barley	mitochondrion, plasma membrane	23.21	44.74
OQU84732	Sorghum	mitochondrion	50.85	44.21
Os05t0586700-00	Rice	nucleus, plastid	43.34	41.5
HORVU6Hr1G076620.3	Barley	mitochondrion	34.47	38.26
TraesCS1D01G436600.1	Wheat	plastid	42.32	34.44
HORVU1Hr1G093170.2	Barley	cytosol, plastid	27.99	30.37

Protein Annotations

ArrayExpress:VIT_16s0050g02650	EMBL:FN595243	EnsemblPlants:VIT_16s0050g02650.t01	EnsemblPlantsGene:VIT_16s0050g02650	EntrezGene:100244979	EntrezGene:LOC100244979
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	PANTHER:PTHR34967	PANTHER:PTHR34967:SF1	ProteinID:CCB47757
ProteinID:CCB47757.1	RefSeq:XP_002268340	RefSeq:XP_002268340.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI00015CCE4A
UniProt:F6H6F5	wikigene:100244979	wikigene:LOC100244979	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr16:-:19665952..19669287

Molecular Weight (calculated)

33154.5 Da

IEP (calculated)

8.264

GRAVY (calculated)

0.397

Length

293 amino acids

Sequence
(BLAST)

001: MVKLASARES RLYGTRLARN RFEYINAGLY VFATIVLLSG FVSQLSRDPK SGLALMMIGL GLLFVVNVHD LVAHMAGIDY RLGLMEFDLQ LGLVEFSVPF
101: VQAMGYLLSF LGILFLFLQE EKGYGYFKLE RHALNMLIAG PVLWVLGSIH NSCQIYERAD GHIQILQQSV HIPFLMGSLL FMVGSIINCH EQARLVHHGI
201: DLLGMAWVWL GMFGSLLFFI GGLMNVVKVF KMQQMDGLRL EKLRGGAQER LIHEREGQIP LILEDQRRRK IHVEETMPVV VPTPYRDVLV GHS

Best Arabidopsis Sequence Match ( AT5G24130.1 )
(BLAST)

001: MVKLATAREI RTYGPRLGRS RAEYINAGLY LFATVVLIGG FTATGFSWEP RSGLVLILLA LVLITAVNVH DLVAHLAGID YRLRLMEYDL QLGLVEFAVP
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI

Arabidopsis Description

At5g24130 [Source:UniProtKB/TrEMBL;Acc:Q9FL61]
SUBAcon: [plasma membrane]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.