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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plasma membrane

Predictor Summary:
  • plastid 1
  • golgi 2
  • mitochondrion 3
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 3
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion, plasma membrane
Any Predictor:mitochondrion, plastid, secretory
BaCelLo:plastid
MultiLoc:golgi
Plant-mPloc:mitochondrion
Predotar:mitochondrion
PProwler:secretory
TargetP:mitochondrion
WoLF PSORT:plasma membrane
YLoc:plasma membrane
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
HORVU3Hr1G026120.1 Barley mitochondrion, plasma membrane 100.0 100.0
TraesCS3D01G138100.1 Wheat plasma membrane 96.15 94.34
TraesCS3B01G155100.1 Wheat mitochondrion, plasma membrane 96.15 94.34
TraesCS3A01G137300.1 Wheat plasma membrane 95.51 93.42
Zm00001d016098_P002 Maize mitochondrion, plasma membrane 68.91 71.43
Os02t0257200-01 Rice nucleus, plastid 68.91 70.72
OQU84732 Sorghum mitochondrion 70.83 65.58
VIT_16s0050g02650.t01 Wine grape mitochondrion, plasma membrane 49.04 52.22
GSMUA_Achr6P22890_001 Banana mitochondrion, plasma membrane 46.47 51.42
GSMUA_Achr5P06770_001 Banana mitochondrion 49.04 50.83
GSMUA_Achr10P... Banana mitochondrion 42.31 50.38
KRH53446 Soybean mitochondrion, plasma membrane 44.55 46.96
HORVU5Hr1G032740.1 Barley mitochondrion, plasma membrane 22.76 46.71
Solyc03g007340.2.1 Tomato mitochondrion, plasma membrane 46.79 46.35
AT5G24130.1 Thale cress plasma membrane 46.15 45.57
Bra009736.1-P Field mustard mitochondrion, plasma membrane 45.83 45.4
CDX88079 Canola mitochondrion, plasma membrane 45.83 45.4
CDX80417 Canola plasma membrane 45.51 45.08
PGSC0003DMT400023438 Potato plasma membrane 29.81 44.93
HORVU6Hr1G076620.3 Barley mitochondrion 31.73 37.5
HORVU1Hr1G093170.2 Barley cytosol, plastid 27.24 31.48
Protein Annotations
EMBL:AK354743EnsemblPlants:HORVU3Hr1G058570.1EnsemblPlantsGene:HORVU3Hr1G058570GO:GO:0005575GO:GO:0016020GO:GO:0016021
PANTHER:PTHR34967PANTHER:PTHR34967:SF1SEG:segTMHMM:TMhelixUniParc:UPI0002004ED3UniProt:F2CSZ1
MapMan:35.2:::::
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CSZ1]
Coordinates
chrchr3H:-:442119601..442120956
Molecular Weight (calculated)
33462.0 Da
IEP (calculated)
10.187
GRAVY (calculated)
0.192
Length
312 amino acids
Sequence
(BLAST)
001: MVKLATARDC RAYSLGAAGG ETSRNRRWEY INAGVYVFAA VLLVVGFLAQ LWPWAVSTKA GLAVAVVGLL GVLAVNAHDL LAHVAGVDYN LGLAGLDTQF
101: VLVELAAPAV QLAGAALTLV ALILFEIQME RGRRRGLEKH GLNLLIAGPA LWCLGSIHNM CQVYERANGH VQILQKSVHI PFLLGSTLFF IGGVVNRNDV
201: HGHSSHSSAL LGRSWAWYCL FGSLLFLAGG LLNLLKVFKK QQMGGRGLEK LRGGAQERLN REREGKVPLI LEEGRRGKHG GNVGAPRHEP RAPPVPPPPE
301: GSYKDALVSG GN
Best Arabidopsis Sequence Match ( AT5G24130.1 )
(BLAST)
001: MVKLATAREI RTYGPRLGRS RAEYINAGLY LFATVVLIGG FTATGFSWEP RSGLVLILLA LVLITAVNVH DLVAHLAGID YRLRLMEYDL QLGLVEFAVP
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI
Arabidopsis Description
At5g24130 [Source:UniProtKB/TrEMBL;Acc:Q9FL61]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.