Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- plastid 2
- extracellular 4
- endoplasmic reticulum 5
- vacuole 4
- plasma membrane 6
- golgi 4
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400015077 | |
| PGSC0003DMT400050482 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G24130.1 | PGSC0003DMT400015077 | AT5G22290.1 | 21798944 |
| AT5G24130.1 | PGSC0003DMT400050482 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g007340.2.1 | Tomato | mitochondrion, plasma membrane | 81.16 | 53.33 |
| VIT_16s0050g02650.t01 | Wine grape | mitochondrion, plasma membrane | 56.04 | 39.59 |
| CDX80417 | Canola | plasma membrane | 52.17 | 34.29 |
| KRH53446 | Soybean | mitochondrion, plasma membrane | 48.31 | 33.78 |
| Bra009736.1-P | Field mustard | mitochondrion, plasma membrane | 50.72 | 33.33 |
| CDX88079 | Canola | mitochondrion, plasma membrane | 50.72 | 33.33 |
| AT5G24130.1 | Thale cress | plasma membrane | 50.72 | 33.23 |
| GSMUA_Achr10P... | Banana | mitochondrion | 38.16 | 30.15 |
| HORVU3Hr1G026120.1 | Barley | mitochondrion, plasma membrane | 44.93 | 29.81 |
| HORVU3Hr1G058570.1 | Barley | mitochondrion, plasma membrane | 44.93 | 29.81 |
| TraesCS3D01G138100.1 | Wheat | plasma membrane | 44.93 | 29.25 |
| TraesCS3B01G155100.1 | Wheat | mitochondrion, plasma membrane | 44.93 | 29.25 |
| Os02t0257200-01 | Rice | nucleus, plastid | 42.51 | 28.95 |
| GSMUA_Achr6P22890_001 | Banana | mitochondrion, plasma membrane | 39.13 | 28.72 |
| TraesCS3A01G137300.1 | Wheat | plasma membrane | 43.96 | 28.53 |
| Zm00001d016098_P002 | Maize | mitochondrion, plasma membrane | 41.06 | 28.24 |
| GSMUA_Achr5P06770_001 | Banana | mitochondrion | 40.58 | 27.91 |
| TraesCS1B01G461700.1 | Wheat | mitochondrion, plasma membrane | 34.3 | 26.3 |
| Zm00001d009718_P001 | Maize | mitochondrion, plasma membrane | 32.85 | 25.76 |
| TraesCS1A01G426800.1 | Wheat | mitochondrion, plasma membrane | 33.82 | 25.74 |
| OQU84732 | Sorghum | mitochondrion | 41.06 | 25.22 |
| HORVU1Hr1G093170.2 | Barley | cytosol, plastid | 31.88 | 24.44 |
| HORVU6Hr1G076620.3 | Barley | mitochondrion | 30.92 | 24.24 |
| KXG22640 | Sorghum | mitochondrion, plasma membrane | 32.37 | 23.76 |
| Os05t0586700-00 | Rice | nucleus, plastid | 33.82 | 22.88 |
| TraesCS1D01G436600.1 | Wheat | plastid | 34.3 | 19.72 |
| HORVU5Hr1G032740.1 | Barley | mitochondrion, plasma membrane | 4.83 | 6.58 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400023438 | EnsemblPlantsGene:PGSC0003DMG400009074 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | PANTHER:PTHR34967 |
| PANTHER:PTHR34967:SF1 | PGSC:PGSC0003DMG400009074 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0002955F54 | UniProt:M1AIC6 |
| MapMan:35.2 | : | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400009074]
Coordinates
chr3:-:48845919..48847640
Molecular Weight (calculated)
23562.9 Da
IEP (calculated)
9.109
GRAVY (calculated)
-0.234
Length
207 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKQAVSLLI AGPALWLLGS IHNSCQIYER ADGHVQILQQ SVNIPFLLGS LLFLVGSLLN WREQSGYVHH GLKLLSEDWM LFGLFGSLLL FIGGLMNVVK
101: VFKMQQMSGL RLEKLRGGAQ DRLIQEREGQ MPLLIEEQRR RRQSSVEEGQ MPLLIEEQRR RRQSSVEEGQ MPLLVEEQRR RKKSPVEETT SSTVAPTPYK
201: DVLVGQA
101: VFKMQQMSGL RLEKLRGGAQ DRLIQEREGQ MPLLIEEQRR RRQSSVEEGQ MPLLIEEQRR RRQSSVEEGQ MPLLVEEQRR RKKSPVEETT SSTVAPTPYK
201: DVLVGQA
001: MVKLATAREI RTYGPRLGRS RAEYINAGLY LFATVVLIGG FTATGFSWEP RSGLVLILLA LVLITAVNVH DLVAHLAGID YRLRLMEYDL QLGLVEFAVP
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI
101: LVQIAGSVVF FLGIFFVFHQ AETKRGYSGR EHHALNLLIA GPLLWLIGSI HNSCQIYERA DSHVQILQQC VYIPFLVGSL LFLVSAVLNS LDISGSSRSG
201: LKLLGERWIW LGISGAICLF VGGLLNVVKV FNFVQISGLR LEKLRGGAQD RLLEGREGYL PLVAEEERIR KMEADHEASS RAKPRAHTTS KAGEGATETV
301: VVSSPTPYKD VLVGQI
Arabidopsis Description
At5g24130 [Source:UniProtKB/TrEMBL;Acc:Q9FL61]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.