Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 5
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 5
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400008268 | Potato | extracellular, golgi | 99.41 | 99.41 |
| AT4G30996.1 | Thale cress | extracellular, golgi | 68.64 | 67.44 |
| VIT_11s0206g00100.t01 | Wine grape | extracellular, golgi | 68.64 | 67.05 |
| CDX68715 | Canola | extracellular, golgi | 68.05 | 66.86 |
| CDY28236 | Canola | extracellular, golgi | 68.05 | 66.47 |
| Bra010260.1-P | Field mustard | extracellular, golgi | 67.46 | 66.28 |
| CDY51486 | Canola | extracellular, golgi | 67.46 | 66.28 |
| Bra011240.1-P | Field mustard | extracellular, golgi | 67.46 | 65.9 |
| AT2G24290.1 | Thale cress | extracellular, golgi | 67.46 | 65.9 |
| CDY23272 | Canola | extracellular, golgi | 66.86 | 65.7 |
| CDX72284 | Canola | extracellular, golgi | 66.27 | 64.74 |
| GSMUA_AchrUn_... | Banana | extracellular, golgi | 66.86 | 62.78 |
| CDY13405 | Canola | cytosol | 44.97 | 62.3 |
| VIT_00s0912g00010.t01 | Wine grape | cytosol | 42.01 | 61.74 |
| KRH12934 | Soybean | endoplasmic reticulum | 63.91 | 60.67 |
| KRH37920 | Soybean | endoplasmic reticulum | 62.13 | 59.32 |
| Zm00001d025794_P002 | Maize | golgi, plasma membrane, plastid | 62.13 | 55.56 |
| TraesCS2B01G375800.1 | Wheat | golgi | 61.54 | 55.32 |
| TraesCS2A01G356500.1 | Wheat | golgi | 60.95 | 54.79 |
| Os04t0501800-00 | Rice | golgi, plasma membrane | 63.31 | 54.59 |
| TraesCS2D01G355400.1 | Wheat | golgi | 60.95 | 54.21 |
| EES11077 | Sorghum | mitochondrion, plastid | 60.95 | 52.82 |
| Solyc01g098600.2.1 | Tomato | cytosol, mitochondrion, nucleus, plastid | 34.32 | 41.73 |
| Solyc07g049730.2.1 | Tomato | nucleus | 40.83 | 35.03 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 14.79 | 33.33 |
| HORVU2Hr1G086810.2 | Barley | cytosol | 47.93 | 32.14 |
Protein Annotations
| EnsemblPlants:Solyc07g005180.2.1 | EnsemblPlantsGene:Solyc07g005180.2 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF4 |
| PFAM:PF06364 | SignalP:SignalP-TM | TMHMM:TMhelix | UniParc:UPI000276BDB8 | UniProt:K4CAZ0 | MapMan:35.2 |
Description
No Description!
Coordinates
chr7:-:176824..181975
Molecular Weight (calculated)
19070.2 Da
IEP (calculated)
7.176
GRAVY (calculated)
-0.254
Length
169 amino acids
Sequence
(BLAST)
(BLAST)
001: MARQSGNCLR CCLVIFAVVS ALCVSGPAIY WKFKKLKVKA AQSCMPCKCD CSPPLSLLEV APGLANLTIT DCGKDDPDLK EEMEKQFVDL LSEELKLQEA
101: VDKEHAHHMN ITFVEARRLA TEYQKEAEKC IATTETCEVG RERAVVLYAK EMKLTNLWER RARQAGWKD
101: VDKEHAHHMN ITFVEARRLA TEYQKEAEKC IATTETCEVG RERAVVLYAK EMKLTNLWER RARQAGWKD
001: MARRSGNCMR CLVIFSVVSA LLVCGPALYW KLNKGFVGSA RSTNSICPPC VCDFPPPLSL LQIAPGLANL SITGCGSDDP ELKEEMEKPF VDLLTEELKL
101: QEAVADEHSR HMNVTLAEAK RVASQYQKEA EKCNAATEIC ESARERAQAL LLKERKITFL WERRARQLGW EGE
101: QEAVADEHSR HMNVTLAEAK RVASQYQKEA EKCNAATEIC ESARERAQAL LLKERKITFL WERRARQLGW EGE
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ38]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.