CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 4
golgi 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH12934	Soybean	endoplasmic reticulum	88.7	88.2
AT4G30996.1	Thale cress	extracellular, golgi	67.23	69.19
CDY51486	Canola	extracellular, golgi	67.23	69.19
VIT_11s0206g00100.t01	Wine grape	extracellular, golgi	66.1	67.63
Bra010260.1-P	Field mustard	extracellular, golgi	65.54	67.44
CDY13405	Canola	cytosol	46.33	67.21
CDX68715	Canola	extracellular, golgi	64.97	66.86
CDY23272	Canola	extracellular, golgi	64.97	66.86
CDY28236	Canola	extracellular, golgi	64.97	66.47
Bra011240.1-P	Field mustard	extracellular, golgi	64.97	66.47
AT2G24290.1	Thale cress	extracellular, golgi	64.41	65.9
CDX72284	Canola	extracellular, golgi	63.28	64.74
VIT_00s0912g00010.t01	Wine grape	cytosol	41.81	64.35
Solyc07g005180.2.1	Tomato	nucleus	59.32	62.13
PGSC0003DMT400008268	Potato	extracellular, golgi	59.32	62.13
GSMUA_AchrUn_...	Banana	extracellular, golgi	62.15	61.11
Zm00001d025794_P002	Maize	golgi, plasma membrane, plastid	58.76	55.03
TraesCS2B01G375800.1	Wheat	golgi	57.63	54.26
Os04t0501800-00	Rice	golgi, plasma membrane	59.32	53.57
EES11077	Sorghum	mitochondrion, plastid	58.76	53.33
TraesCS2A01G356500.1	Wheat	golgi	56.5	53.19
TraesCS2D01G355400.1	Wheat	golgi	56.5	52.63
KRH36493	Soybean	cytosol, mitochondrion, nucleus	28.81	50.49
KRH56166	Soybean	endoplasmic reticulum	43.5	41.18
KRH25351	Soybean	endoplasmic reticulum	42.37	39.68
KRH11478	Soybean	golgi	40.11	39.23
KRH68600	Soybean	mitochondrion, plastid	37.85	37.85
KRG96872	Soybean	mitochondrion, plastid	37.85	37.64
KRH22588	Soybean	extracellular	36.72	34.21
HORVU2Hr1G086810.2	Barley	cytosol	42.94	30.16

Protein Annotations

EMBL:ACUP02005560	EnsemblPlants:KRH37920	EnsemblPlantsGene:GLYMA_09G098800	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1068	PANTHER:PTHR32254	PANTHER:PTHR32254:SF4	PFAM:PF06364	ProteinID:KRH37920	ProteinID:KRH37920.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI00023CB1DE	UniProt:I1L2E4	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr9:-:17423237..17426783

Molecular Weight (calculated)

19718.6 Da

IEP (calculated)

6.967

GRAVY (calculated)

-0.423

Length

177 amino acids

Sequence
(BLAST)

001: MSRGRSDSGG WLRGCLVVFA VVSALGVCGP ALYWRFKNAI TLRNNNNKLS CPSCLCDCPP PLSLFQLAPG LANLSVSDCG SNDPDLKEEM EKQFVDLLSE
101: ELKLQESVTE ANTRHMNITL AEAKRVASQY QREADKCITA TETCEQARER AQAILTKEKK MTSVWEKRAR QMGWEGE

Best Arabidopsis Sequence Match ( AT2G24290.1 )
(BLAST)

001: MARRSGNCMR CLVIFSVVSA LLVCGPALYW KLNKGFVGSA RSTNSICPPC VCDFPPPLSL LQIAPGLANL SITGCGSDDP ELKEEMEKPF VDLLTEELKL
101: QEAVADEHSR HMNVTLAEAK RVASQYQKEA EKCNAATEIC ESARERAQAL LLKERKITFL WERRARQLGW EGE

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZQ38]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.