CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 5
vacuole 5
plasma membrane 5
golgi 6
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, golgi
Any Predictor:	secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	golgi

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra010260.1-P	Field mustard	extracellular, golgi	97.67	97.67
CDY23272	Canola	extracellular, golgi	97.09	97.09
CDX68715	Canola	extracellular, golgi	94.19	94.19
CDY28236	Canola	extracellular, golgi	93.6	93.06
AT4G30996.1	Thale cress	extracellular, golgi	91.28	91.28
CDX72284	Canola	extracellular, golgi	88.95	88.44
CDY13405	Canola	cytosol	60.47	85.25
VIT_11s0206g00100.t01	Wine grape	extracellular, golgi	72.67	72.25
VIT_00s0912g00010.t01	Wine grape	cytosol	48.26	72.17
KRH12934	Soybean	endoplasmic reticulum	70.35	67.98
GSMUA_AchrUn_...	Banana	extracellular, golgi	70.93	67.78
Solyc07g005180.2.1	Tomato	nucleus	66.28	67.46
PGSC0003DMT400008268	Potato	extracellular, golgi	66.28	67.46
KRH37920	Soybean	endoplasmic reticulum	69.19	67.23
TraesCS2A01G356500.1	Wheat	golgi	63.37	57.98
Os04t0501800-00	Rice	golgi, plasma membrane	64.53	56.63
TraesCS2B01G375800.1	Wheat	golgi	61.63	56.38
Zm00001d025794_P002	Maize	golgi, plasma membrane, plastid	61.63	56.08
TraesCS2D01G355400.1	Wheat	golgi	61.05	55.26
EES11077	Sorghum	mitochondrion, plastid	61.63	54.36
CDY21300	Canola	nucleus	36.05	40.0
CDX90859	Canola	extracellular	40.7	40.0
CDY12195	Canola	extracellular	41.28	38.8
CDX94551	Canola	extracellular, golgi, vacuole	40.12	38.76
CDY53389	Canola	extracellular	33.72	38.67
CDY18288	Canola	extracellular	33.72	38.67
CDX90862	Canola	extracellular	38.95	38.29
CDY61410	Canola	extracellular	40.7	38.25
HORVU2Hr1G086810.2	Barley	cytosol	48.84	33.33

Protein Annotations

EnsemblPlants:CDY51486	EnsemblPlantsGene:GSBRNA2T00003558001	GO:A0A078IND2	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1068	ncoils:Coil	PANTHER:PTHR32254	PANTHER:PTHR32254:SF4	PFAM:PF06364	ProteinID:CDY51486
ProteinID:CDY51486.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EBB919	UniProt:A0A078IND2	MapMan:35.2

Description

BnaC03g77420DBnaC03g77420D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IND2]

Coordinates

chrLK033000:-:78182..79900

Molecular Weight (calculated)

19017.9 Da

IEP (calculated)

5.855

GRAVY (calculated)

-0.267

Length

172 amino acids

Sequence
(BLAST)

001: MARRSGDCMK CLVIFAVVSA LVVCGPALYW KFNKGFAGST RKTSVCPPCL CDCPPPVSLL ELAPGLANLS VTDCGGDDPE LKQEMEKQFV DLLTEELKLQ
101: EAVADEHTRH MNVTLAEAKR VASQYQKEAE KCNAATEICE SARERAQALL IKERKITALW EKRARQSGWE GE

Best Arabidopsis Sequence Match ( AT4G30996.1 )
(BLAST)

001: MPRRSGDCMR CLVIFAVVSA LVVCGPALYW KFNKGFVGST RANSLCPPCV CDCPPPLSLL QIAPGLANLS ITDCGSDDPE LKQEMEKQFV DLLTEELKLQ
101: EAVADEHSRH MNVTLAEAKR VASQYQKEAE KCNAATEICE SARERAEALL IKERKITSLW EKRARQSGWE GE

Arabidopsis Description

NKS1 [Source:UniProtKB/TrEMBL;Acc:A0A178UW02]
SUBAcon: [golgi,extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.