Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX90862 | Canola | extracellular | 86.45 | 76.57 |
| Bra000792.1-P | Field mustard | extracellular | 85.16 | 75.43 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 83.23 | 73.3 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 83.87 | 73.03 |
| CDX90859 | Canola | extracellular | 80.65 | 71.43 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 27.1 | 56.0 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 36.13 | 55.45 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 36.77 | 49.14 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 34.19 | 47.75 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 34.84 | 46.55 |
| CDY12195 | Canola | extracellular | 54.84 | 46.45 |
| CDY61410 | Canola | extracellular | 54.84 | 46.45 |
| CDY53389 | Canola | extracellular | 43.23 | 44.67 |
| KRH11478 | Soybean | golgi | 51.61 | 44.2 |
| CDY18288 | Canola | extracellular | 42.58 | 44.0 |
| CDY13405 | Canola | cytosol | 34.19 | 43.44 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 51.61 | 42.33 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 45.81 | 39.89 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 45.16 | 38.25 |
| CDX72284 | Canola | extracellular, golgi | 41.94 | 37.57 |
| TraesCS5A01G412200.1 | Wheat | plastid | 44.52 | 37.3 |
| CDX68715 | Canola | extracellular, golgi | 41.29 | 37.21 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 43.87 | 37.16 |
| CDY28236 | Canola | extracellular, golgi | 41.29 | 36.99 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 42.58 | 36.87 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 43.87 | 36.76 |
| CDY23272 | Canola | extracellular, golgi | 40.65 | 36.63 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 41.94 | 36.31 |
| CDY51486 | Canola | extracellular, golgi | 40.0 | 36.05 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 41.29 | 35.96 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 40.65 | 35.39 |
| Zm00001d034279_P001 | Maize | extracellular | 40.0 | 34.44 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 52.26 | 31.15 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 40.65 | 28.9 |
Protein Annotations
| EnsemblPlants:CDY21300 | EnsemblPlantsGene:GSBRNA2T00015632001 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 |
| PFAM:PF06364 | ProteinID:CDY21300 | ProteinID:CDY21300.1 | SEG:seg | UniParc:UPI0004EEF55B | UniProt:A0A078G4A0 |
| MapMan:35.2 | : | : | : | : | : |
Description
BnaC03g29840DBnaC03g29840D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G4A0]
Coordinates
chrLK032119:-:357651..359644
Molecular Weight (calculated)
17726.8 Da
IEP (calculated)
4.646
GRAVY (calculated)
-0.789
Length
155 amino acids
Sequence
(BLAST)
(BLAST)
001: MIRRQKKTAK VTIEDSLHSS CPPCVCDCSS QPLLSIPDGL SNHSFLDCMR REEGSEESES SFTEMVAEEL KLREAQAQED EWRADRLLLD AKKAASQYQK
101: EADKCSMGME TCELAREKSE ATLDEQRRLS YMWELRARQN GWKEVTNVVV SSDNL
101: EADKCSMGME TCELAREKSE ATLDEQRRLS YMWELRARQN GWKEVTNVVV SSDNL
001: MTRRQKKTAK VVTVVMGLCI VAYIAGPSLY WHLNETIADS LHSSCPPCVC DCSSQPLLSI PDGLSNHSFL DCMRHEEGSE ESESSFTEMV AEELKLREAQ
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
101: AQEDEWRADR LLLDAKKAAS QYQKEADKCS MGMETCELAR EKAEAALDEQ RRLSYMWELR ARQGGWKEGT VASDVI
Arabidopsis Description
Protein of unknown function (DUF1068) [Source:TAIR;Acc:AT4G04360]
SUBAcon: [golgi,extracellular]
SUBAcon: [golgi,extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.