Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 2
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 94.59 | 58.99 |
Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 39.64 | 58.67 |
KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 50.45 | 55.45 |
TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 85.59 | 53.37 |
Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 79.28 | 48.09 |
EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 73.87 | 45.81 |
Zm00001d034279_P001 | Maize | extracellular | 71.17 | 43.89 |
CDY18288 | Canola | extracellular | 52.25 | 38.67 |
Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 51.35 | 38.0 |
CDY53389 | Canola | extracellular | 51.35 | 38.0 |
GSMUA_Achr5P24760_001 | Banana | golgi | 59.46 | 34.92 |
KRH56166 | Soybean | endoplasmic reticulum | 58.56 | 34.76 |
KRH25351 | Soybean | endoplasmic reticulum | 58.56 | 34.39 |
CDY21300 | Canola | nucleus | 47.75 | 34.19 |
CDY12195 | Canola | extracellular | 53.15 | 32.24 |
Bra005603.1-P | Field mustard | extracellular | 53.15 | 32.24 |
CDY61410 | Canola | extracellular | 53.15 | 32.24 |
AT1G05070.1 | Thale cress | extracellular | 53.15 | 32.07 |
KRH11478 | Soybean | golgi | 51.35 | 31.49 |
PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 55.86 | 31.47 |
Solyc07g049730.2.1 | Tomato | nucleus | 55.86 | 31.47 |
AT2G32580.1 | Thale cress | extracellular | 51.35 | 31.15 |
AT4G04360.1 | Thale cress | extracellular, golgi | 48.65 | 30.68 |
KRH22588 | Soybean | extracellular | 52.25 | 30.53 |
CDX90862 | Canola | extracellular | 47.75 | 30.29 |
Bra000792.1-P | Field mustard | extracellular | 47.75 | 30.29 |
CDX94551 | Canola | extracellular, golgi, vacuole | 47.75 | 29.78 |
CDX90859 | Canola | extracellular | 46.85 | 29.71 |
VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 52.25 | 29.15 |
GSMUA_Achr6P04630_001 | Banana | plastid | 61.26 | 26.15 |
TraesCS2D01G355400.1 | Wheat | golgi | 41.44 | 24.21 |
Protein Annotations
EnsemblPlants:TraesCS5D01G421600.1 | EnsemblPlantsGene:TraesCS5D01G421600 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 |
PFAM:PF06364 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr5D:-:481760779..481761114
Molecular Weight (calculated)
12661.8 Da
IEP (calculated)
4.886
GRAVY (calculated)
-1.067
Length
111 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPDCAKQFK EVKNHASGEE TELLIEELKQ REEDATEAQQ QADVKLLEAK KLASQYQKEA DKCSSGMDTC EEAREKSAES LLGQRKLTAL WEERARELGW
101: KPGNVKPHLN Q
101: KPGNVKPHLN Q
001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
Arabidopsis Description
At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.