Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, plasma membrane
Predictor Summary:
Predictor Summary:
- nucleus 2
- plastid 2
- endoplasmic reticulum 4
- extracellular 3
- vacuole 3
- plasma membrane 4
- golgi 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os04t0471300-01 | |
| Os08t0497900-01 | |
| Os09t0481300-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G32580.1 | Os04t0471300-01 | AT4G26455.1 | 21798944 |
| AT2G32580.1 | Os08t0497900-01 | AT4G26455.1 | 21798944 |
| AT2G32580.1 | Os09t0481300-01 | AT4G26455.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G412200.1 | Wheat | plastid | 85.79 | 84.86 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 81.42 | 83.24 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 83.06 | 83.06 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 83.61 | 82.7 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 79.23 | 81.46 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 78.69 | 80.45 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 78.14 | 80.34 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 50.82 | 80.17 |
| Zm00001d034279_P001 | Maize | extracellular | 78.69 | 80.0 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 50.27 | 79.31 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 48.09 | 79.28 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 77.05 | 79.21 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 74.86 | 62.84 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 32.79 | 59.41 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 24.04 | 58.67 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 54.64 | 52.91 |
| CDY12195 | Canola | extracellular | 48.63 | 48.63 |
| Bra005603.1-P | Field mustard | extracellular | 48.63 | 48.63 |
| CDY61410 | Canola | extracellular | 48.63 | 48.63 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 52.46 | 48.24 |
| KRH25351 | Soybean | endoplasmic reticulum | 49.73 | 48.15 |
| AT2G32580.1 | Thale cress | extracellular | 48.09 | 48.09 |
| AT1G05070.1 | Thale cress | extracellular | 48.09 | 47.83 |
| KRH56166 | Soybean | endoplasmic reticulum | 48.63 | 47.59 |
| CDY53389 | Canola | extracellular | 38.8 | 47.33 |
| KRH11478 | Soybean | golgi | 46.45 | 46.96 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 44.26 | 46.02 |
| CDY18288 | Canola | extracellular | 37.7 | 46.0 |
| Solyc07g049730.2.1 | Tomato | nucleus | 49.18 | 45.69 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 37.16 | 45.33 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 48.63 | 45.18 |
| CDX90862 | Canola | extracellular | 43.17 | 45.14 |
| Bra000792.1-P | Field mustard | extracellular | 43.17 | 45.14 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 43.17 | 44.38 |
| CDX90859 | Canola | extracellular | 42.08 | 44.0 |
| CDY21300 | Canola | nucleus | 37.16 | 43.87 |
| KRH22588 | Soybean | extracellular | 44.81 | 43.16 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 57.38 | 40.38 |
| Os04t0501800-00 | Rice | golgi, plasma membrane | 34.43 | 32.14 |
Protein Annotations
| MapMan:35.2 | EntrezGene:4334296 | ProteinID:AAM19025.1 | ProteinID:AAN65021.1 | ProteinID:ABF99147.1 | EMBL:AK062835 |
| ProteinID:BAF13354.1 | ProteinID:BAS86645.1 | ncoils:Coil | InterPro:DUF1068 | ProteinID:EAZ28769.1 | GO:GO:0005575 |
| GO:GO:0016020 | GO:GO:0016021 | EnsemblPlantsGene:Os03g0777500 | EnsemblPlants:Os03t0777500-01 | PFAM:PF06364 | PANTHER:PTHR32254 |
| PANTHER:PTHR32254:SF11 | UniProt:Q8S7I4 | TMHMM:TMhelix | UniParc:UPI00000AC251 | RefSeq:XP_015628403.1 | SEG:seg |
Description
Protein of unknown function DUF1068 family protein. (Os03t0777500-01)
Coordinates
chr3:-:32244456..32246820
Molecular Weight (calculated)
19876.3 Da
IEP (calculated)
4.735
GRAVY (calculated)
-0.542
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGGSTSSSS SWGPSPALVT AVVALLGLGL AAYIVGPQLY WHASEALGRS TGACPACDCD CDARPLLALP EDCSKQFKDV KSRASGEETE KSFTELLIEE
101: LKQREEEATQ AQQQADVKLL EAKKLASQYQ KEADKCSSGM DTCEEAREKS SEALVEQRKL TALWEERARE LGWKPGNIKP HQT
101: LKQREEEATQ AQQQADVKLL EAKKLASQYQ KEADKCSSGM DTCEEAREKS SEALVEQRKL TALWEERARE LGWKPGNIKP HQT
001: MAKHTAALKV GLALLALSMI GYILGPPLYW HLTEALAVSA TSCSACVCDC SSLPLLTIPT GLSNGSFTDC AKRDPEVNED TEKNYAELLT EELKQREAAS
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
101: MEKHKRVDTG LLEAKKITSS YQKEADKCNS GMETCEEARE KAEKALVEQK KLTSMWEQRA RQKGYKDGAT KSTVKSKSGT EVA
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.