Factsheet for PGSC0003DMT400002793

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plasma membrane, plastid, extracellular

Predictor Summary:

plastid 2
mitochondrion 2
extracellular 2
nucleus 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plasma membrane, plastid
Any Predictor:	mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	extracellular
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400015077
PGSC0003DMT400022426
PGSC0003DMT400050482
PGSC0003DMT400056956
PGSC0003DMT400071510
PGSC0003DMT400073246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G05070.1	PGSC0003DMT400071510	AT4G19030.1	21798944
AT1G05070.1	PGSC0003DMT400073246	AT4G19030.1	21798944
AT2G32580.1	PGSC0003DMT400022426	AT4G26455.1	21798944
AT2G32580.1	PGSC0003DMT400056956	AT4G26455.1	21798944
AT2G32580.1	PGSC0003DMT400015077	AT5G22290.1	21798944
AT2G32580.1	PGSC0003DMT400050482	AT5G22290.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g049730.2.1	Tomato	nucleus	98.48	98.48
KRH56166	Soybean	endoplasmic reticulum	61.42	64.71
KRH25351	Soybean	endoplasmic reticulum	61.93	64.55
VIT_12s0059g01040.t01	Wine grape	extracellular, plasma membrane	64.97	64.32
CDY18288	Canola	extracellular	47.72	62.67
Bra005603.1-P	Field mustard	extracellular	57.36	61.75
CDY12195	Canola	extracellular	57.36	61.75
CDY61410	Canola	extracellular	57.36	61.75
AT2G32580.1	Thale cress	extracellular	56.85	61.2
AT1G05070.1	Thale cress	extracellular	56.35	60.33
KRH22588	Soybean	extracellular	57.87	60.0
Bra015386.1-P	Field mustard	endoplasmic reticulum, extracellular	45.18	59.33
CDY53389	Canola	extracellular	44.67	58.67
TraesCS5D01G421600.1	Wheat	cytosol, mitochondrion, nucleus	31.47	55.86
TraesCS5B01G416100.1	Wheat	cytosol, mitochondrion, nucleus	32.49	55.17
GSMUA_Achr5P24760_001	Banana	golgi	52.79	55.03
TraesCS5A01G412400.1	Wheat	cytosol, mitochondrion, nucleus	31.98	54.31
TraesCS5D01G421400.1	Wheat	endoplasmic reticulum, plasma membrane	45.69	50.56
TraesCS5B01G416000.1	Wheat	endoplasmic reticulum, plasma membrane, plastid	46.7	49.73
EER90798	Sorghum	endoplasmic reticulum, extracellular, plasma membrane	45.18	49.72
TraesCS5A01G412700.1	Wheat	endoplasmic reticulum, plasma membrane	44.16	48.88
TraesCS5A01G412200.1	Wheat	plastid	45.69	48.65
Os03t0777500-01	Rice	endoplasmic reticulum, plasma membrane	45.18	48.63
HORVU5Hr1G099550.1	Barley	endoplasmic reticulum, plasma membrane	45.18	48.63
TraesCS5B01G416300.1	Wheat	endoplasmic reticulum, plasma membrane	43.65	48.04
Zm00001d034279_P001	Maize	extracellular	43.65	47.78
TraesCS5A01G412800.1	Wheat	extracellular, plasma membrane	43.15	47.75
PGSC0003DMT400073558	Potato	cytosol, nucleus, plastid	28.93	41.01
GSMUA_Achr6P04630_001	Banana	plastid	53.3	40.38
PGSC0003DMT400008268	Potato	extracellular, golgi	34.52	40.24
HORVU5Hr1G099640.1	Barley	extracellular, mitochondrion, plasma membrane, plastid	42.13	38.07

Protein Annotations

EnsemblPlants:PGSC0003DMT400002793	EnsemblPlantsGene:PGSC0003DMG400001084	EntrezGene:102585793	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:DUF1068	PANTHER:PTHR32254	PANTHER:PTHR32254:SF11	PFAM:PF06364	PGSC:PGSC0003DMG400001084	RefSeq:XP_006364174.1
TMHMM:TMhelix	UniParc:UPI000296E935	UniProt:M0ZKN7	MapMan:35.2	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400001084]

Coordinates

chr7:-:45813462..45819463

Molecular Weight (calculated)

21717.0 Da

IEP (calculated)

6.023

GRAVY (calculated)

-0.442

Length

197 amino acids

Sequence
(BLAST)

001: MALNQAGRSS PCSPRVLKSV LGLMAISLVA YILGPPLYWH LMEGLAAVSR SSSVTTCPPC NCDCNSEPFF FIPPGLSNVS LTDCAKRDPE VGEDTEKNFA
101: DLLSEELKLR EAEASENQRK ADMALLEAKK LTSQYMKEAD KCNSGMETCE EAREKAEVLL LAQKKMTATW EMRARQKGWK EGASKSRTQS QGNVQTM

Best Arabidopsis Sequence Match ( AT1G05070.1 )
(BLAST)

001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA

Arabidopsis Description

At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.