Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, extracellular
Predictor Summary:
Predictor Summary:
- extracellular 6
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 5
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0080g00970.t01 | |
| VIT_10s0003g01830.t01 | |
| VIT_19s0015g01790.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G05070.1 | VIT_10s0003g01830.t01 | AT4G19030.1 | 21798944 |
| AT2G32580.1 | VIT_19s0015g01790.t01 | AT4G26455.1 | 21798944 |
| AT2G32580.1 | VIT_06s0080g00970.t01 | AT5G22290.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH56166 | Soybean | endoplasmic reticulum | 65.33 | 69.52 |
| Bra005603.1-P | Field mustard | extracellular | 63.82 | 69.4 |
| CDY12195 | Canola | extracellular | 63.82 | 69.4 |
| CDY61410 | Canola | extracellular | 63.82 | 69.4 |
| KRH25351 | Soybean | endoplasmic reticulum | 65.33 | 68.78 |
| AT1G05070.1 | Thale cress | extracellular | 62.81 | 67.93 |
| AT2G32580.1 | Thale cress | extracellular | 62.31 | 67.76 |
| CDY53389 | Canola | extracellular | 50.25 | 66.67 |
| CDY18288 | Canola | extracellular | 50.25 | 66.67 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 49.75 | 66.0 |
| Solyc07g049730.2.1 | Tomato | nucleus | 65.33 | 65.99 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 64.32 | 64.97 |
| KRH22588 | Soybean | extracellular | 60.3 | 63.16 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 54.77 | 57.67 |
| TraesCS5B01G416100.1 | Wheat | cytosol, mitochondrion, nucleus | 32.16 | 55.17 |
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 30.65 | 52.59 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 47.24 | 52.51 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 48.24 | 52.46 |
| TraesCS5D01G421600.1 | Wheat | cytosol, mitochondrion, nucleus | 29.15 | 52.25 |
| TraesCS5D01G421400.1 | Wheat | endoplasmic reticulum, plasma membrane | 45.73 | 51.12 |
| Zm00001d034279_P001 | Maize | extracellular | 46.23 | 51.11 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 47.24 | 50.81 |
| HORVU5Hr1G099550.1 | Barley | endoplasmic reticulum, plasma membrane | 46.23 | 50.27 |
| TraesCS5A01G412700.1 | Wheat | endoplasmic reticulum, plasma membrane | 44.72 | 50.0 |
| TraesCS5A01G412200.1 | Wheat | plastid | 46.23 | 49.73 |
| TraesCS5A01G412800.1 | Wheat | extracellular, plasma membrane | 44.22 | 49.44 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 44.22 | 49.16 |
| VIT_00s0912g00010.t01 | Wine grape | cytosol | 26.63 | 46.09 |
| VIT_11s0206g00100.t01 | Wine grape | extracellular, golgi | 37.19 | 42.77 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 55.28 | 42.31 |
| HORVU5Hr1G099640.1 | Barley | extracellular, mitochondrion, plasma membrane, plastid | 43.22 | 39.45 |
Protein Annotations
| EntrezGene:100256881 | wikigene:100256881 | MapMan:35.2 | ProteinID:CBI28836 | ProteinID:CBI28836.3 | ncoils:Coil |
| UniProt:D7TEB3 | InterPro:DUF1068 | EMBL:FN595765 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| EntrezGene:LOC100256881 | wikigene:LOC100256881 | PFAM:PF06364 | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 | SignalP:SignalP-TM |
| TIGR:TC61417 | TMHMM:TMhelix | UniParc:UPI00019846BF | ArrayExpress:VIT_12s0059g01040 | EnsemblPlantsGene:VIT_12s0059g01040 | EnsemblPlants:VIT_12s0059g01040.t01 |
| unigene:Vvi.3524 | RefSeq:XP_002272631 | RefSeq:XP_002272631.1 | RefSeq:XP_002272665 | RefSeq:XP_002272665.1 | SEG:seg |
Description
No Description!
Coordinates
chr12:+:5965906..5969697
Molecular Weight (calculated)
21474.7 Da
IEP (calculated)
5.753
GRAVY (calculated)
-0.242
Length
199 amino acids
Sequence
(BLAST)
(BLAST)
001: MALNQPAWCT PALLKVLLGL LALCLAGYIL GPPLYWHSME GLAAVSRSTS AAAASSSSCP ACVCDCSSQP LLSIPHGLNN ISFSDCSKHD PDMSEDTEKN
101: FAELLTEELK LREAEALENQ QRADMALLEA KKITSQYLKE ADKCNSGMET CEEAREKAEA ALAAQKKLTA MWLQRARQKG WKEGVAKSRA GSQGNVQAV
101: FAELLTEELK LREAEALENQ QRADMALLEA KKITSQYLKE ADKCNSGMET CEEAREKAEA ALAAQKKLTA MWLQRARQKG WKEGVAKSRA GSQGNVQAV
001: MARHTAALKI GLALLGLSMA GYILGPPLYW HLTEALAAVS ASSCPSCPCE CSTYSAVTIP KELSNASFAD CAKHDPEVNE DTEKNYAELL TEELKLREAE
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
101: SLEKHKRADM GLLEAKKVTS SYQKEADKCN SGMETCEEAR EKAELALAEQ KKLTSRWEER ARQKGWREGS TKPNVKSKSN VQVA
Arabidopsis Description
At1g05070/T7A14_6 [Source:UniProtKB/TrEMBL;Acc:Q94AB8]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.