Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G412400.1 | Wheat | cytosol, mitochondrion, nucleus | 85.34 | 85.34 |
| KRH36493 | Soybean | cytosol, mitochondrion, nucleus | 50.0 | 57.43 |
| Solyc02g080960.1.1 | Tomato | cytosol, mitochondrion, nucleus | 35.34 | 54.67 |
| TraesCS5B01G416000.1 | Wheat | endoplasmic reticulum, plasma membrane, plastid | 83.62 | 52.43 |
| Os03t0777500-01 | Rice | endoplasmic reticulum, plasma membrane | 79.31 | 50.27 |
| TraesCS5B01G416300.1 | Wheat | endoplasmic reticulum, plasma membrane | 76.72 | 49.72 |
| EER90798 | Sorghum | endoplasmic reticulum, extracellular, plasma membrane | 74.14 | 48.04 |
| Zm00001d034279_P001 | Maize | extracellular | 72.41 | 46.67 |
| CDY18288 | Canola | extracellular | 52.59 | 40.67 |
| CDY53389 | Canola | extracellular | 52.59 | 40.67 |
| Bra015386.1-P | Field mustard | endoplasmic reticulum, extracellular | 51.72 | 40.0 |
| KRH25351 | Soybean | endoplasmic reticulum | 60.34 | 37.04 |
| KRH56166 | Soybean | endoplasmic reticulum | 59.48 | 36.9 |
| GSMUA_Achr5P24760_001 | Banana | golgi | 59.48 | 36.51 |
| CDY21300 | Canola | nucleus | 46.55 | 34.84 |
| AT1G05070.1 | Thale cress | extracellular | 55.17 | 34.78 |
| CDY61410 | Canola | extracellular | 54.31 | 34.43 |
| CDY12195 | Canola | extracellular | 54.31 | 34.43 |
| Bra005603.1-P | Field mustard | extracellular | 54.31 | 34.43 |
| AT2G32580.1 | Thale cress | extracellular | 53.45 | 33.88 |
| KRH11478 | Soybean | golgi | 52.59 | 33.7 |
| Solyc07g049730.2.1 | Tomato | nucleus | 56.03 | 32.99 |
| PGSC0003DMT400002793 | Potato | extracellular, mitochondrion, plasma membrane, plastid | 55.17 | 32.49 |
| VIT_12s0059g01040.t01 | Wine grape | extracellular, plasma membrane | 55.17 | 32.16 |
| KRH22588 | Soybean | extracellular | 52.59 | 32.11 |
| AT4G04360.1 | Thale cress | extracellular, golgi | 47.41 | 31.25 |
| CDX90862 | Canola | extracellular | 46.55 | 30.86 |
| Bra000792.1-P | Field mustard | extracellular | 46.55 | 30.86 |
| CDX90859 | Canola | extracellular | 45.69 | 30.29 |
| CDX94551 | Canola | extracellular, golgi, vacuole | 45.69 | 29.78 |
| GSMUA_Achr6P04630_001 | Banana | plastid | 61.21 | 27.31 |
| TraesCS2B01G375800.1 | Wheat | golgi | 37.93 | 23.4 |
Protein Annotations
| EnsemblPlants:TraesCS5B01G416100.1 | EnsemblPlantsGene:TraesCS5B01G416100 | InterPro:DUF1068 | ncoils:Coil | PANTHER:PTHR32254 | PANTHER:PTHR32254:SF11 |
| PFAM:PF06364 | SEG:seg | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5B:-:590256049..590256399
Molecular Weight (calculated)
13251.5 Da
IEP (calculated)
4.911
GRAVY (calculated)
-1.099
Length
116 amino acids
Sequence
(BLAST)
(BLAST)
001: MFPDCAKQFK EVKSHASGEE TEKGHTELLI EELKQREEEA MEAQQQADVK LLEAKKLASQ YQNEADKCSS GMDTCEEARE KPVESLFGQK KLTALWEEKA
101: RELGWKPGNA MPHRNQ
101: RELGWKPGNA MPHRNQ
001: MVHSLVNCAK RDPEVNEDTE KNYAELLTEE LKQREAASME KHKRVDTGLL EAKKITSSYQ KEADKCNSGM ETCEEAREKA EKALVEQKKL TSMWEQRARQ
101: KGYKDGATKS TVKSKSGTEV A
101: KGYKDGATKS TVKSKSGTEV A
Arabidopsis Description
Expressed protein [Source:UniProtKB/TrEMBL;Acc:O80895]
SUBAcon: [mitochondrion,nucleus,cytosol]
SUBAcon: [mitochondrion,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.