Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 91.18 | 92.19 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 87.68 | 88.83 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 82.72 | 78.81 |
| Os08t0497900-01 | Rice | nucleus | 43.57 | 51.3 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 49.63 | 49.54 |
| EES14314 | Sorghum | nucleus | 37.87 | 40.71 |
| GSMUA_Achr10P... | Banana | cytosol | 26.1 | 28.17 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 20.04 | 27.25 |
| GSMUA_Achr4P01630_001 | Banana | cytosol, golgi, nucleus | 29.78 | 27.23 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 19.12 | 26.07 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 28.12 | 25.76 |
| CDY24192 | Canola | plastid | 14.15 | 25.41 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.44 | 25.07 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 27.94 | 24.76 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 18.75 | 24.29 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 19.49 | 23.98 |
| PGSC0003DMT400022426 | Potato | nucleus | 25.74 | 23.89 |
| CDX82542 | Canola | plastid | 19.12 | 23.48 |
| KRH56393 | Soybean | cytosol | 24.63 | 22.83 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 21.32 | 22.75 |
| PGSC0003DMT400056956 | Potato | nucleus | 25.0 | 22.74 |
| KRH62532 | Soybean | endoplasmic reticulum | 24.08 | 22.39 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 20.59 | 21.62 |
| CDX89333 | Canola | nucleus | 19.67 | 21.62 |
| AT5G56210.1 | Thale cress | nucleus | 20.04 | 21.41 |
| Bra026434.1-P | Field mustard | nucleus | 19.49 | 21.41 |
| CDX94330 | Canola | nucleus | 18.93 | 20.98 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 10.48 | 20.65 |
| CDY17403 | Canola | nucleus | 10.48 | 20.65 |
| AT4G26455.1 | Thale cress | nucleus | 17.65 | 19.63 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 9.93 | 19.35 |
Protein Annotations
| EnsemblPlants:TraesCS7A01G240200.1 | EnsemblPlantsGene:TraesCS7A01G240200 | ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF4 | SEG:seg |
| TMHMM:TMhelix | MapMan:20.4.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr7A:-:215190294..215193885
Molecular Weight (calculated)
58834.4 Da
IEP (calculated)
5.013
GRAVY (calculated)
-0.596
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MAVTATDMDR MANGAVESSA ESPAAEAPPE ARTKGRGLRR WRRIQREHRA EGPAAPATAA GGRGRADDDA AQLHKRRLPI GAAAPPKEKH EVAVEEVESS
101: TASVESRFVP LEPVPAPAPA KLDPDLGLLV SSVGFSVGAG GADSDNSEDR SSKSSTAASA PRHDFPRERD RLRAHTAAAI HGKNHRTARA RADRQSAHTA
201: FSLAKAEADN SRWSVESDRR SSNAVHGRKQ GVGSIGNGIH KELSDGDDHS DEGQPSDEMR STAGGYCTQS GSSVVGKLGG GNGDSGDADV EDTFDEGGVG
301: KGEMGLEMNS CANPFAESIL SLQRTQEALE NEIRNFVVIG KESTDDLDAR DDEWSNSLHI EESVEEANEK RKDLESRVEQ ASILIKEKDS RILELEALSR
401: TRAWRSAIQS ANNQLLQPDL DQLLQEKMEA EIQCIILTRA SQTWTPVAED RKALYKEQKC LLGDYKQLEL KLRSAENRAA ILGEMVEKLE AQCKELSASA
501: EILQLQSRTS SASLLCFIQF ILLLIAIGIY VVRLSPSSAE FVPT
101: TASVESRFVP LEPVPAPAPA KLDPDLGLLV SSVGFSVGAG GADSDNSEDR SSKSSTAASA PRHDFPRERD RLRAHTAAAI HGKNHRTARA RADRQSAHTA
201: FSLAKAEADN SRWSVESDRR SSNAVHGRKQ GVGSIGNGIH KELSDGDDHS DEGQPSDEMR STAGGYCTQS GSSVVGKLGG GNGDSGDADV EDTFDEGGVG
301: KGEMGLEMNS CANPFAESIL SLQRTQEALE NEIRNFVVIG KESTDDLDAR DDEWSNSLHI EESVEEANEK RKDLESRVEQ ASILIKEKDS RILELEALSR
401: TRAWRSAIQS ANNQLLQPDL DQLLQEKMEA EIQCIILTRA SQTWTPVAED RKALYKEQKC LLGDYKQLEL KLRSAENRAA ILGEMVEKLE AQCKELSASA
501: EILQLQSRTS SASLLCFIQF ILLLIAIGIY VVRLSPSSAE FVPT
001: MNESVPDSVE DNGNSVPANG LLVLPDNDHE EGGVGSPQRS NSVESPGGSV HSTRKGFGLK KWRRIKRDGP VRDEAAPVDD GSKLLKRGLA GLVNPPSKHV
101: EFSSVEARQS SEGSVGSVNM VHHPGVANGF SPDIGCMFAV GQAFEKSEEH SGNTIGGKNV VGGKVVSGSQ EKLWSDTIKR ASEERGDIEK EKPCSSLDSD
201: LRSSDFVFST GSVSVGNHGE KDERLTMNYI GGFSNEGQVK EEVQTYSRSE NGNKEDDGES KKNNNHWADK DALADSIRSF AVLQEVLWKE VQSFQELGKE
301: SVLLHSNTDE LSSDQPSHQN CKEDNSTSSG SKALILKEKV KLLEHKLEEA RAALEAKEAR IQELENSKIE SELECIFQRK IETEIEHLML TRSLSSLQVL
401: QETKKLHSLK EDPVSNRGNI LGKTCKLGFY ILTQLILLVS ILRFLVLQFS PASRLVIPT
101: EFSSVEARQS SEGSVGSVNM VHHPGVANGF SPDIGCMFAV GQAFEKSEEH SGNTIGGKNV VGGKVVSGSQ EKLWSDTIKR ASEERGDIEK EKPCSSLDSD
201: LRSSDFVFST GSVSVGNHGE KDERLTMNYI GGFSNEGQVK EEVQTYSRSE NGNKEDDGES KKNNNHWADK DALADSIRSF AVLQEVLWKE VQSFQELGKE
301: SVLLHSNTDE LSSDQPSHQN CKEDNSTSSG SKALILKEKV KLLEHKLEEA RAALEAKEAR IQELENSKIE SELECIFQRK IETEIEHLML TRSLSSLQVL
401: QETKKLHSLK EDPVSNRGNI LGKTCKLGFY ILTQLILLVS ILRFLVLQFS PASRLVIPT
Arabidopsis Description
WIP3WPP domain interacting protein 3 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSR4]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.