Factsheet for TraesCS1B01G266900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 16595579
plastid: 22160430

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2B01G351300.1
TraesCS2D01G332000.1
TraesCS3A01G158400.1
TraesCS3D01G166100.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS6A01G272000.1
TraesCS6B01G299600.1
TraesCS6D01G252200.1
TraesCS7A01G042800.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G038700.1
TraesCS7D01G238200.1
TraesCSU01G064900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	TraesCS6A01G272000.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS6B01G299600.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS6D01G252200.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS2A01G331000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2B01G351300.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2D01G332000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5A01G257000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5B01G256500.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5D01G265600.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7A01G240200.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7B01G135800.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7D01G238200.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2A01G331000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS2B01G351300.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS2D01G332000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5A01G257000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5B01G256500.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5D01G265600.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7A01G240200.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7B01G135800.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7D01G238200.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS3A01G158400.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS3D01G166100.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS7A01G042800.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS7D01G038700.1	AT5G11390.1	18591351
AT3G63130.1	TraesCSU01G064900.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS2A01G331000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2B01G351300.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2D01G332000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5A01G257000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5B01G256500.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5D01G265600.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7A01G240200.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7B01G135800.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7D01G238200.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2A01G331000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS2B01G351300.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS2D01G332000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5A01G257000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5B01G256500.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5D01G265600.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7A01G240200.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7B01G135800.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7D01G238200.1	AT5G56210.1	20579133
AT5G19320.1	TraesCS2A01G331000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS2B01G351300.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS2D01G332000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5A01G257000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5B01G256500.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5D01G265600.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7A01G240200.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7B01G135800.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7D01G238200.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS3A01G158400.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS3D01G166100.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS7A01G042800.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS7D01G038700.1	AT5G11390.1	18591351
AT5G19320.1	TraesCSU01G064900.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS2A01G331000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS2B01G351300.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS2D01G332000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5A01G257000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5B01G256500.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5D01G265600.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7A01G240200.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7B01G135800.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7D01G238200.1	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G255600.1	Wheat	cytosol, plastid	96.37	95.68
TraesCS1A01G256200.1	Wheat	cytosol	93.65	93.82
TraesCS3B01G433100.1	Wheat	cytosol, plastid	86.93	86.46
Os05t0543200-01	Rice	plasma membrane	84.94	86.03
EES05430	Sorghum	cytosol, nucleus, plastid	82.76	83.98
Zm00001d051112_P001	Maize	plasma membrane	77.31	82.56
EES05435	Sorghum	cytosol, plastid	82.21	81.18
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	76.41	80.5
HORVU1Hr1G063300.3	Barley	plastid	93.83	79.17
EES07543	Sorghum	cytosol	35.03	76.89
VIT_07s0104g00520.t01	Wine grape	plastid	66.61	67.84
GSMUA_Achr11P...	Banana	cytosol, plastid	67.33	67.7
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	64.43	65.86
KRH71426	Soybean	nucleus	63.7	65.85
KRH32020	Soybean	cytosol	63.7	65.73
Solyc09g065190.1.1	Tomato	plastid	63.52	65.54
PGSC0003DMT400086322	Potato	cytosol	63.52	65.54
KRG91256	Soybean	endoplasmic reticulum	61.52	63.72
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	60.44	63.31
KRH35557	Soybean	endoplasmic reticulum, nucleus	60.98	63.04
PGSC0003DMT400023310	Potato	plastid	62.79	62.57
Solyc01g079680.2.1	Tomato	plastid	62.43	62.55
AT5G19320.1	Thale cress	cytosol	61.34	62.02
CDX92540	Canola	cytosol	62.79	61.79
CDY56462	Canola	cytosol, plastid	59.53	61.31
Bra007730.1-P	Field mustard	cytosol, plastid	59.17	60.93
AT3G63130.1	Thale cress	plastid	58.8	60.56
Zm00001d034691_P001	Maize	cytosol	41.74	60.53
Zm00001d052426_P001	Maize	cytosol	14.88	59.85
Os05t0409200-00	Rice	cytosol	11.62	59.81
CDX93931	Canola	cytosol	36.3	59.17
Bra040432.1-P	Field mustard	plastid	57.17	58.77
CDX89174	Canola	plastid	57.17	58.44
CDY02566	Canola	cytosol	20.87	58.08
CDY16082	Canola	cytosol	11.62	56.64
CDX76683	Canola	mitochondrion	58.98	55.08
CDX93932	Canola	cytosol	11.07	53.04
Bra026911.1-P	Field mustard	cytosol	12.52	52.27
Bra013834.1-P	Field mustard	cytosol	11.98	50.0
GSMUA_Achr8P13660_001	Banana	cytosol	53.36	48.04
Bra020034.1-P	Field mustard	cytosol	19.96	44.72
CDY44911	Canola	cytosol	19.96	43.82
AT3G06000.1	Thale cress	cytosol	15.79	41.23
Zm00001d043604_P002	Maize	cytosol	36.66	37.62
Bra020788.1-P	Field mustard	cytosol, mitochondrion	15.43	36.02
CDY27720	Canola	cytosol, mitochondrion	15.61	35.39
Zm00001d046105_P001	Maize	peroxisome	37.21	34.86
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	11.25	32.46
TraesCS7B01G100000.1	Wheat	plastid	15.61	14.03

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516
PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047	EnsemblPlantsGene:TraesCS1B01G266900
EnsemblPlants:TraesCS1B01G266900.1	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg	:	:

Description

No Description!

Coordinates

chr1B:+:469969406..469971061

Molecular Weight (calculated)

59586.3 Da

IEP (calculated)

4.300

GRAVY (calculated)

-0.347

Length

551 amino acids

Sequence
(BLAST)

001: MESTAEDFQP RTFSVKLWPP SESTRLMLVE RMTKNLSAEC IFSRKYGILS KEEAHENAKR IEEVCFASAE EHFKKEPDGD GSSAVQLYAK ETSKLMLEVL
101: KKGPRTTEEP EAPVVDTPLE PADTVFDISG GKRAFIEAEE AKELLSPLTK PGNSYKRICF SNRSFGIGAA NVAGPILESI KSQLTEVDIS DFVAGRPEDE
201: ALDVMRIFSK ALAGSVLSYL NISDNALGEK GVRAFTELLK SQGNLEELYV MNDGISGEAA KALSELIPST EKLKVLHFHN NMTGDEGAMP IAEMVKRSPN
301: LESFRCSATR IGSDGGVALA EALGTCTRLK KLDIRDNLFG VEAGVALSKT LPKLSGLVEL YLSDLNLENE GTIAIVNVLK QSAPQLEVLE MAGNEITAKA
401: AKAVAECLTA MQSLKKLTLA ENELKDDGAV TIAKSLEEGH PSLKELDVST NLFQRSGARC FAQAVANKPG FALLNINSNF ISDEGVDEVK EILKGGKNSL
501: EVLGLLDEND PEGDPEDGEE EEDGEDDDDE EKDGDDGGLG SKLQGLKVEE D

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.