Factsheet for Zm00001d046105_P001

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome

Predictor Summary:

peroxisome 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	peroxisome
Any Predictor:	cytosol, mitochondrion, peroxisome
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	peroxisome
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d003334_P001
Zm00001d005997_P002
Zm00001d010047_P001
Zm00001d017768_P006
Zm00001d020667_P001
Zm00001d020879_P001
Zm00001d025667_P001
Zm00001d038964_P001
Zm00001d039272_P003
Zm00001d051562_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	Zm00001d017768_P006	AT3G50910.1	21798944
AT3G63130.1	Zm00001d020667_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d038964_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d051562_P001	AT3G50910.1	21798944
AT3G63130.1	Zm00001d003334_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d005997_P002	AT4G26455.1	17600715
AT3G63130.1	Zm00001d020879_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d025667_P001	AT4G26455.1	17600715
AT3G63130.1	Zm00001d003334_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d005997_P002	AT4G26455.1	20579133
AT3G63130.1	Zm00001d020879_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d025667_P001	AT4G26455.1	20579133
AT3G63130.1	Zm00001d010047_P001	AT5G11390.1	18591351
AT3G63130.1	Zm00001d039272_P003	AT5G11390.1	18591351
AT3G63130.1	Zm00001d003334_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d005997_P002	AT5G56210.1	17600715
AT3G63130.1	Zm00001d020879_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d025667_P001	AT5G56210.1	17600715
AT3G63130.1	Zm00001d003334_P001	AT5G56210.1	20579133
AT3G63130.1	Zm00001d005997_P002	AT5G56210.1	20579133
AT3G63130.1	Zm00001d020879_P001	AT5G56210.1	20579133
AT3G63130.1	Zm00001d025667_P001	AT5G56210.1	20579133
AT5G19320.1	Zm00001d003334_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d005997_P002	AT4G26455.1	17600715
AT5G19320.1	Zm00001d020879_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d025667_P001	AT4G26455.1	17600715
AT5G19320.1	Zm00001d010047_P001	AT5G11390.1	18591351
AT5G19320.1	Zm00001d039272_P003	AT5G11390.1	18591351
AT5G19320.1	Zm00001d003334_P001	AT5G56210.1	17600715
AT5G19320.1	Zm00001d005997_P002	AT5G56210.1	17600715
AT5G19320.1	Zm00001d020879_P001	AT5G56210.1	17600715
AT5G19320.1	Zm00001d025667_P001	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043604_P002	Maize	cytosol	51.7	56.61
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	38.61	43.4
Zm00001d051112_P001	Maize	plasma membrane	37.24	42.44
Zm00001d034691_P001	Maize	cytosol	26.7	41.32
EES05430	Sorghum	cytosol, nucleus, plastid	36.56	39.59
EES05435	Sorghum	cytosol, plastid	37.41	39.43
Bra020034.1-P	Field mustard	cytosol	15.99	38.21
TraesCS1A01G256200.1	Wheat	cytosol	35.03	37.45
CDY44911	Canola	cytosol	15.99	37.45
TraesCS1B01G266900.1	Wheat	plastid	34.86	37.21
TraesCS1D01G255600.1	Wheat	cytosol, plastid	35.03	37.12
Os05t0543200-01	Rice	plasma membrane	34.18	36.95
TraesCS3D01G394300.1	Wheat	cytosol, plastid	34.69	36.82
HORVU3Hr1G090080.1	Barley	plastid	34.52	36.64
TraesCS3B01G433100.1	Wheat	cytosol, plastid	34.35	36.46
TraesCS3A01G400100.1	Wheat	plastid	34.86	34.8
VIT_07s0104g00520.t01	Wine grape	plastid	30.44	33.09
KRG91256	Soybean	endoplasmic reticulum	29.93	33.08
GSMUA_Achr11P...	Banana	cytosol, plastid	30.78	33.03
KRH35557	Soybean	endoplasmic reticulum, nucleus	29.93	33.02
AT5G19320.1	Thale cress	cytosol	30.27	32.66
KRH32020	Soybean	cytosol	29.42	32.4
PGSC0003DMT400086322	Potato	cytosol	29.42	32.4
Solyc09g065190.1.1	Tomato	plastid	29.25	32.21
KRH71426	Soybean	nucleus	29.08	32.08
CDX92540	Canola	cytosol	30.44	31.96
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	28.4	31.75
HORVU1Hr1G063300.3	Barley	plastid	35.2	31.7
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	28.74	31.35
Solyc01g079680.2.1	Tomato	plastid	28.57	30.55
AT3G63130.1	Thale cress	plastid	27.55	30.28
PGSC0003DMT400023310	Potato	plastid	28.4	30.2
CDY56462	Canola	cytosol, plastid	27.04	29.72
Bra007730.1-P	Field mustard	cytosol, plastid	26.87	29.53
CDX89174	Canola	plastid	26.87	29.31
Bra040432.1-P	Field mustard	plastid	26.7	29.29
CDY02566	Canola	cytosol	9.52	28.28
CDX76683	Canola	mitochondrion	27.21	27.12
Zm00001d052426_P001	Maize	cytosol	5.95	25.55
GSMUA_Achr8P13660_001	Banana	cytosol	25.68	24.67
CDX93931	Canola	cytosol	13.61	23.67
CDX93932	Canola	cytosol	3.91	20.0
Bra013834.1-P	Field mustard	cytosol	3.57	15.91
Os05t0409200-00	Rice	cytosol	2.72	14.95
Bra026911.1-P	Field mustard	cytosol	3.23	14.39
CDY16082	Canola	cytosol	2.72	14.16
AT3G06000.1	Thale cress	cytosol	4.93	13.74
CDY27720	Canola	cytosol, mitochondrion	5.27	12.76
Bra020788.1-P	Field mustard	cytosol, mitochondrion	4.76	11.86
Zm00001d044774_P004	Maize	plastid	12.41	11.25
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	3.23	9.95

Protein Annotations

KEGG:00052+3.2.1.23	KEGG:00511+3.2.1.23	KEGG:00531+3.2.1.23	KEGG:00600+3.2.1.23	KEGG:00604+3.2.1.23	Gene3D:2.60.120.260
MapMan:23.5.1.5	Gene3D:3.80.10.10	UniProt:A0A1D6P0W5	ProteinID:AQL03722.1	GO:GO:0003674	GO:GO:0003824
GO:GO:0004553	GO:GO:0005975	GO:GO:0008150	GO:GO:0008152	GO:GO:0016787	GO:GO:0016798
InterPro:Galactose-bd-like_sf	InterPro:Gly_Hdrlase_35_cat	InterPro:Glycoside_Hdrlase_35	InterPro:Glycoside_hydrolase_SF	InterPro:IPR008979	InterPro:IPR032675
InterPro:LRR_dom_sf	PFAM:PF01301	PRINTS:PR00742	PANTHER:PTHR23421	PANTHER:PTHR23421:SF68	SMART:SM00368
SUPFAM:SSF49785	SUPFAM:SSF51445	SUPFAM:SSF52047	UniParc:UPI000842E133	EnsemblPlantsGene:Zm00001d046105	EnsemblPlants:Zm00001d046105_P001
EnsemblPlants:Zm00001d046105_T001	SEG:seg	:	:	:	:

Description

Putative RAN GTPase activating family protein

Coordinates

chr9:+:63808264..63811676

Molecular Weight (calculated)

65277.4 Da

IEP (calculated)

7.735

GRAVY (calculated)

-0.444

Length

588 amino acids

Sequence
(BLAST)

001: MREMISRSTQ GNGETHGEEV SGIKDVVTQK DTTKPTNIDL MPRRGVTEDD TRRGLAKRHL RPPTPGTGAQ AHRRHELYAK ESSKMMLEVL RKGPRTTAEL
101: EAPVADTSLV SADAPRVLAD TVLDISGGER AFIEADEAKE LLSPLTKPGN SYKRICFSNR SFGIGAANVA GPILDSVKNQ LTEVDISDFV AGRSEDEALD
201: VMRIFSKALE GSVLRYLNIS DNALGEKGVR AFSELLKSQE SLEELYVMND GISEEAAKAL SELIPATEKL KVLHFHNNMT GDEVELNKQF SCTLPLTNKT
301: NKQVTFKFKY HGGTNFGRIS GGPYITTSYD YDAPSDEYGN IRQPKYGHLK DLHDLIRSME KILVHGKYND TSYGKNAIVT KYTYGGSSVC FINNQFVDRD
401: VKVTLGGGTH LVPAWSVSIL PDCKTVAYNT AKIKTQTSVM VKKANSVEKE LEALRWSWMP ENLKPFMTDH RDSFRQSQLL EQIATSTDQS DYLWYRTSLE
501: HKGEGSYTLY VNTSGHEMYV FVNGRLVGQN YSADGAFVFQ LQSPVKLHSG KNYVSLLSGT VGLKSAKTLV IVAENPDKFR VVAFSARF

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.