Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX93932 | Canola | cytosol | 39.42 | 46.96 |
| Zm00001d017239_P001 | Maize | mitochondrion, plasma membrane | 70.8 | 18.55 |
| Zm00001d051112_P001 | Maize | plasma membrane | 62.04 | 16.47 |
| EES05430 | Sorghum | cytosol, nucleus, plastid | 64.96 | 16.39 |
| EES05435 | Sorghum | cytosol, plastid | 64.96 | 15.95 |
| Os05t0543200-01 | Rice | plasma membrane | 62.77 | 15.81 |
| TraesCS3D01G394300.1 | Wheat | cytosol, plastid | 62.77 | 15.52 |
| HORVU3Hr1G090080.1 | Barley | plastid | 62.04 | 15.34 |
| TraesCS3B01G433100.1 | Wheat | cytosol, plastid | 62.04 | 15.34 |
| TraesCS1B01G266900.1 | Wheat | plastid | 59.85 | 14.88 |
| TraesCS1D01G255600.1 | Wheat | cytosol, plastid | 59.85 | 14.77 |
| TraesCS3A01G400100.1 | Wheat | plastid | 62.77 | 14.6 |
| TraesCS1A01G256200.1 | Wheat | cytosol | 58.39 | 14.55 |
| Solyc09g065190.1.1 | Tomato | plastid | 55.47 | 14.23 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 56.2 | 14.05 |
| PGSC0003DMT400086322 | Potato | cytosol | 54.74 | 14.04 |
| KRH71426 | Soybean | nucleus | 53.28 | 13.7 |
| KRH32020 | Soybean | cytosol | 53.28 | 13.67 |
| VIT_07s0104g00520.t01 | Wine grape | plastid | 53.28 | 13.49 |
| Bra007730.1-P | Field mustard | cytosol, plastid | 52.55 | 13.46 |
| CDY56462 | Canola | cytosol, plastid | 52.55 | 13.46 |
| AT3G63130.1 | Thale cress | plastid | 51.82 | 13.27 |
| HORVU1Hr1G063300.3 | Barley | plastid | 62.77 | 13.17 |
| VIT_05s0020g02970.t01 | Wine grape | cytosol, plastid | 49.63 | 12.62 |
| Bra040432.1-P | Field mustard | plastid | 48.91 | 12.5 |
| CDX89174 | Canola | plastid | 48.18 | 12.24 |
| CDX76683 | Canola | mitochondrion | 52.55 | 12.2 |
| KRG91256 | Soybean | endoplasmic reticulum | 46.72 | 12.03 |
| CDX92540 | Canola | cytosol | 48.18 | 11.79 |
| KRH35557 | Soybean | endoplasmic reticulum, nucleus | 45.26 | 11.63 |
| GSMUA_Achr8P13660_001 | Banana | cytosol | 51.82 | 11.6 |
| AT5G19320.1 | Thale cress | cytosol | 45.99 | 11.56 |
| Solyc01g079680.2.1 | Tomato | plastid | 45.26 | 11.27 |
| PGSC0003DMT400023310 | Potato | plastid | 44.53 | 11.03 |
| VIT_19s0014g03800.t01 | Wine grape | cytosol, plastid | 42.34 | 11.03 |
| Zm00001d043604_P002 | Maize | cytosol | 29.2 | 7.45 |
| Bra020034.1-P | Field mustard | cytosol | 11.68 | 6.5 |
| CDY44911 | Canola | cytosol | 11.68 | 6.37 |
| Zm00001d046105_P001 | Maize | peroxisome | 25.55 | 5.95 |
| AT3G06000.1 | Thale cress | cytosol | 7.3 | 4.74 |
| Os05t0409200-00 | Rice | cytosol | 3.65 | 4.67 |
| Bra026911.1-P | Field mustard | cytosol | 4.38 | 4.55 |
| CDY16082 | Canola | cytosol | 3.65 | 4.42 |
| CDX93931 | Canola | cytosol | 9.49 | 3.85 |
| Bra020788.1-P | Field mustard | cytosol, mitochondrion | 6.57 | 3.81 |
| CDY27720 | Canola | cytosol, mitochondrion | 6.57 | 3.7 |
| CDY02566 | Canola | cytosol | 5.11 | 3.54 |
| Bra013834.1-P | Field mustard | cytosol | 2.92 | 3.03 |
| Zm00001d034691_P001 | Maize | cytosol | 7.3 | 2.63 |
| CDY05221 | Canola | cytosol, mitochondrion, nucleus, plastid | 3.65 | 2.62 |
| Zm00001d044774_P004 | Maize | plastid | 11.68 | 2.47 |
Protein Annotations
| EnsemblPlants:Zm00001d052426_P001 | EnsemblPlants:Zm00001d052426_T001 | EnsemblPlantsGene:Zm00001d052426 | Gene3D:1.10.246.200 | InterPro:IPR038214 | InterPro:WPP_dom |
| InterPro:WPP_sf | PANTHER:PTHR24106 | PANTHER:PTHR24106:SF248 | PFAM:PF13943 | ProteinID:AQK57201.1 | UniParc:UPI0008436611 |
| UniProt:A0A1D6QH39 | MapMan:35.1 | : | : | : | : |
Description
RAN GTPase-activating protein 2
Coordinates
chr4:+:189759399..189759812
Molecular Weight (calculated)
15252.4 Da
IEP (calculated)
7.579
GRAVY (calculated)
-0.443
Length
137 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVERMTKTM STESIFSRKY GLLGKQEAHE NAKRIEELCF ASADEHFKNE PDGDGSSAVQ LYAKESSKMM LEVLRKGPRT AAELETPIAN TSLVSPDAPR
101: VLADTVLDIS GGERVLLRQM KQRNCLVHLP NQGIHIK
101: VLADTVLDIS GGERVLLRQM KQRNCLVHLP NQGIHIK
001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
Arabidopsis Description
RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.