Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
20408568
plasma membrane: 23508561 mitochondrion: 27297264 plasma membrane: 27341663 |
msms PMID:
27297264
doi
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID:
27341663
doi
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d017239_P001 | Maize | mitochondrion, plasma membrane | 89.15 | 87.95 |
| EES07543 | Sorghum | cytosol | 41.86 | 86.06 |
| Os05t0543200-01 | Rice | plasma membrane | 85.08 | 80.7 |
| TraesCS1B01G266900.1 | Wheat | plastid | 82.56 | 77.31 |
| TraesCS1A01G256200.1 | Wheat | cytosol | 81.78 | 76.73 |
| TraesCS1D01G255600.1 | Wheat | cytosol, plastid | 82.17 | 76.4 |
| TraesCS3D01G394300.1 | Wheat | cytosol, plastid | 81.98 | 76.35 |
| TraesCS3B01G433100.1 | Wheat | cytosol, plastid | 81.4 | 75.81 |
| HORVU3Hr1G090080.1 | Barley | plastid | 81.2 | 75.63 |
| TraesCS3A01G400100.1 | Wheat | plastid | 81.2 | 71.14 |
| HORVU1Hr1G063300.3 | Barley | plastid | 82.17 | 64.93 |
| Zm00001d034691_P001 | Maize | cytosol | 47.48 | 64.47 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 67.44 | 63.5 |
| Zm00001d052426_P001 | Maize | cytosol | 16.47 | 62.04 |
| VIT_05s0020g02970.t01 | Wine grape | cytosol, plastid | 63.57 | 60.85 |
| Solyc09g065190.1.1 | Tomato | plastid | 62.21 | 60.11 |
| PGSC0003DMT400086322 | Potato | cytosol | 62.21 | 60.11 |
| VIT_07s0104g00520.t01 | Wine grape | plastid | 62.98 | 60.07 |
| KRG91256 | Soybean | endoplasmic reticulum | 61.82 | 59.96 |
| KRH32020 | Soybean | cytosol | 62.02 | 59.93 |
| KRH71426 | Soybean | nucleus | 61.82 | 59.85 |
| VIT_19s0014g03800.t01 | Wine grape | cytosol, plastid | 60.47 | 59.32 |
| KRH35557 | Soybean | endoplasmic reticulum, nucleus | 61.24 | 59.29 |
| Os05t0409200-00 | Rice | cytosol | 12.21 | 58.88 |
| CDX93931 | Canola | cytosol | 38.37 | 58.58 |
| Bra007730.1-P | Field mustard | cytosol, plastid | 60.47 | 58.32 |
| CDY56462 | Canola | cytosol, plastid | 60.27 | 58.13 |
| AT5G19320.1 | Thale cress | cytosol | 60.47 | 57.25 |
| PGSC0003DMT400023310 | Potato | plastid | 60.66 | 56.6 |
| Solyc01g079680.2.1 | Tomato | plastid | 60.27 | 56.55 |
| AT3G63130.1 | Thale cress | plastid | 58.53 | 56.45 |
| CDX92540 | Canola | cytosol | 60.66 | 55.89 |
| CDY16082 | Canola | cytosol | 12.21 | 55.75 |
| Bra040432.1-P | Field mustard | plastid | 57.36 | 55.22 |
| CDX89174 | Canola | plastid | 57.56 | 55.1 |
| CDY02566 | Canola | cytosol | 20.35 | 53.03 |
| CDX76683 | Canola | mitochondrion | 60.27 | 52.71 |
| Bra026911.1-P | Field mustard | cytosol | 13.18 | 51.52 |
| Bra013834.1-P | Field mustard | cytosol | 12.79 | 50.0 |
| CDX93932 | Canola | cytosol | 10.27 | 46.09 |
| GSMUA_Achr8P13660_001 | Banana | cytosol | 53.29 | 44.93 |
| Bra020034.1-P | Field mustard | cytosol | 20.54 | 43.09 |
| CDY44911 | Canola | cytosol | 20.35 | 41.83 |
| Zm00001d043604_P002 | Maize | cytosol | 41.47 | 39.85 |
| AT3G06000.1 | Thale cress | cytosol | 16.09 | 39.34 |
| Zm00001d046105_P001 | Maize | peroxisome | 42.44 | 37.24 |
| Bra020788.1-P | Field mustard | cytosol, mitochondrion | 15.31 | 33.47 |
| CDY27720 | Canola | cytosol, mitochondrion | 15.5 | 32.92 |
| CDY05221 | Canola | cytosol, mitochondrion, nucleus, plastid | 11.24 | 30.37 |
| Zm00001d044774_P004 | Maize | plastid | 18.6 | 14.79 |
Protein Annotations
| Gene3D:1.10.246.200 | MapMan:23.5.1.5 | Gene3D:3.80.10.10 | UniProt:A0A1D6Q540 | ProteinID:AQK53657.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001611 | InterPro:IPR032675 | InterPro:IPR038214 | InterPro:LRR_dom_sf |
| InterPro:Leu-rich_rpt | PFAM:PF13516 | PFAM:PF13943 | PANTHER:PTHR24106 | PANTHER:PTHR24106:SF248 | SMART:SM00368 |
| SUPFAM:SSF52047 | UniParc:UPI000843F6AF | InterPro:WPP_dom | InterPro:WPP_sf | EnsemblPlantsGene:Zm00001d051112 | EnsemblPlants:Zm00001d051112_P001 |
| EnsemblPlants:Zm00001d051112_T001 | SEG:seg | : | : | : | : |
Description
RAN GTPase-activating protein 2
Coordinates
chr4:+:143546529..143548079
Molecular Weight (calculated)
56217.5 Da
IEP (calculated)
4.274
GRAVY (calculated)
-0.307
Length
516 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVDRMTNNL STESIFSRKY RLLGKQEAHE NAKTIEELCF ALADEHFREE PDGDGSSAVQ LYAKETSKMM LEVLKKGPRT TAELEAPVAD TPLVSADTVL
101: DISGGKRAFI EADEAKELLS PLTKPGNSYK RICFSNRSFG IGAANVAGPI LESVKNQLTE VDISDFVAGR SEDEALDVMR IFSKALDGSV LRYLNISDNA
201: LGEKGVRAFS ELLKSQESLE ELYVMNDGIS EEAAKALSEL IPATEKLKVL HFHNNMTGDE GAMYIAEMVK RSPNVESFRC SATRIGSDGG VALSEALGTC
301: TRLKKLDLRD NLFGVDAGLA LSETLPKLPD LVELYLSDLN LENKGTIAIA KALKQSALQL EVLEIAGNEI NAKAAPDLAE CLAVMQSLKK LTLAENELKD
401: NGAVIIAKSL EDGHSDLKEL DVSTNMLQRV GARCFTRAVA NKPDFVQLNI NGNFISDEGV DEVKEILKAG KKSLDVLGPL DENEPDGEPD DEDAEDDEDE
501: LDLKLQSVKV EQDEDD
101: DISGGKRAFI EADEAKELLS PLTKPGNSYK RICFSNRSFG IGAANVAGPI LESVKNQLTE VDISDFVAGR SEDEALDVMR IFSKALDGSV LRYLNISDNA
201: LGEKGVRAFS ELLKSQESLE ELYVMNDGIS EEAAKALSEL IPATEKLKVL HFHNNMTGDE GAMYIAEMVK RSPNVESFRC SATRIGSDGG VALSEALGTC
301: TRLKKLDLRD NLFGVDAGLA LSETLPKLPD LVELYLSDLN LENKGTIAIA KALKQSALQL EVLEIAGNEI NAKAAPDLAE CLAVMQSLKK LTLAENELKD
401: NGAVIIAKSL EDGHSDLKEL DVSTNMLQRV GARCFTRAVA NKPDFVQLNI NGNFISDEGV DEVKEILKAG KKSLDVLGPL DENEPDGEPD DEDAEDDEDE
501: LDLKLQSVKV EQDEDD
001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE
Arabidopsis Description
RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.