Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026911.1-P | Field mustard | cytosol | 97.35 | 83.33 |
| Os05t0409200-00 | Rice | cytosol | 19.47 | 20.56 |
| CDX93931 | Canola | cytosol | 54.87 | 18.34 |
| EES07543 | Sorghum | cytosol | 39.82 | 17.93 |
| CDY05221 | Canola | cytosol, mitochondrion, nucleus, plastid | 29.2 | 17.28 |
| AT5G19320.1 | Thale cress | cytosol | 76.99 | 15.96 |
| CDY02566 | Canola | cytosol | 26.55 | 15.15 |
| CDX92540 | Canola | cytosol | 72.57 | 14.64 |
| Zm00001d034691_P001 | Maize | cytosol | 46.02 | 13.68 |
| VIT_05s0020g02970.t01 | Wine grape | cytosol, plastid | 63.72 | 13.36 |
| KRG91256 | Soybean | endoplasmic reticulum | 62.83 | 13.35 |
| VIT_19s0014g03800.t01 | Wine grape | cytosol, plastid | 61.95 | 13.31 |
| KRH35557 | Soybean | endoplasmic reticulum, nucleus | 61.95 | 13.13 |
| Solyc01g079680.2.1 | Tomato | plastid | 63.72 | 13.09 |
| PGSC0003DMT400023310 | Potato | plastid | 62.83 | 12.84 |
| Zm00001d051112_P001 | Maize | plasma membrane | 55.75 | 12.21 |
| Zm00001d017239_P001 | Maize | mitochondrion, plasma membrane | 55.75 | 12.05 |
| EES05430 | Sorghum | cytosol, nucleus, plastid | 57.52 | 11.97 |
| CDX89174 | Canola | plastid | 56.64 | 11.87 |
| CDY56462 | Canola | cytosol, plastid | 55.75 | 11.78 |
| EES05435 | Sorghum | cytosol, plastid | 57.52 | 11.65 |
| TraesCS1A01G256200.1 | Wheat | cytosol | 56.64 | 11.64 |
| TraesCS1B01G266900.1 | Wheat | plastid | 56.64 | 11.62 |
| TraesCS1D01G255600.1 | Wheat | cytosol, plastid | 56.64 | 11.53 |
| CDY27720 | Canola | cytosol, mitochondrion | 24.78 | 11.52 |
| GSMUA_Achr11P... | Banana | cytosol, plastid | 55.75 | 11.5 |
| Os05t0543200-01 | Rice | plasma membrane | 54.87 | 11.4 |
| TraesCS3B01G433100.1 | Wheat | cytosol, plastid | 55.75 | 11.37 |
| HORVU3Hr1G090080.1 | Barley | plastid | 55.75 | 11.37 |
| TraesCS3D01G394300.1 | Wheat | cytosol, plastid | 55.75 | 11.37 |
| TraesCS3A01G400100.1 | Wheat | plastid | 55.75 | 10.7 |
| CDX76683 | Canola | mitochondrion | 55.75 | 10.68 |
| HORVU1Hr1G063300.3 | Barley | plastid | 56.64 | 9.8 |
| GSMUA_Achr8P13660_001 | Banana | cytosol | 31.86 | 5.88 |
| CDY20626 | Canola | plastid | 26.55 | 5.03 |
| CDY55048 | Canola | plastid | 25.66 | 4.86 |
| CDX93413 | Canola | plastid | 25.66 | 4.86 |
| CDY20954 | Canola | plastid | 25.66 | 4.82 |
| CDY44911 | Canola | cytosol | 9.73 | 4.38 |
| Zm00001d052426_P001 | Maize | cytosol | 4.42 | 3.65 |
| Zm00001d043604_P002 | Maize | cytosol | 15.93 | 3.35 |
| Zm00001d046105_P001 | Maize | peroxisome | 14.16 | 2.72 |
| CDX93932 | Canola | cytosol | 1.77 | 1.74 |
Protein Annotations
| EnsemblPlants:CDY16082 | EnsemblPlantsGene:GSBRNA2T00090491001 | Gene3D:3.80.10.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| InterPro:IPR001611 | InterPro:IPR032675 | InterPro:LRR_dom_sf | InterPro:Leu-rich_rpt | PANTHER:PTHR24106 | PANTHER:PTHR24106:SF248 |
| PFAM:PF13516 | ProteinID:CDY16082 | ProteinID:CDY16082.1 | SEG:seg | SMART:SM00368 | SUPFAM:SSF52047 |
| UniParc:UPI0004EEFC6D | UniProt:A0A078FTC7 | MapMan:35.1 | : | : | : |
Description
BnaC08g40410DBnaC08g40410D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FTC7]
Coordinates
chrLK032060:+:529953..530351
Molecular Weight (calculated)
12333.9 Da
IEP (calculated)
4.736
GRAVY (calculated)
-0.112
Length
113 amino acids
Sequence
(BLAST)
(BLAST)
001: MTISRSVIQE KKTTKVGSEG GIALSEGLEC CAYMKKLDLR DNMFGAEAGV SLSKSLSSYK HLTELYLSYL NLEDEVAIAI AKALKECASP IEVLEMAGND
101: ITLNLSENEL KQK
101: ITLNLSENEL KQK
001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED
Arabidopsis Description
RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.