Factsheet for GSMUA_Achr8P13660_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P12060_001
GSMUA_Achr1P19080_001
GSMUA_Achr2P22980_001
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr6P08980_001
GSMUA_Achr7P06030_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	GSMUA_Achr1P12060_001	AT3G50910.1	21798944
AT3G63130.1	GSMUA_Achr2P22980_001	AT3G50910.1	21798944
AT3G63130.1	GSMUA_Achr6P08980_001	AT3G50910.1	21798944
AT3G63130.1	GSMUA_Achr10P...	AT4G26455.1	17600715
AT3G63130.1	GSMUA_Achr3P04120_001	AT4G26455.1	17600715
AT3G63130.1	GSMUA_Achr4P01630_001	AT4G26455.1	17600715
AT3G63130.1	GSMUA_Achr10P...	AT4G26455.1	20579133
AT3G63130.1	GSMUA_Achr3P04120_001	AT4G26455.1	20579133
AT3G63130.1	GSMUA_Achr4P01630_001	AT4G26455.1	20579133
AT3G63130.1	GSMUA_Achr1P19080_001	AT5G11390.1	18591351
AT3G63130.1	GSMUA_Achr7P06030_001	AT5G11390.1	18591351
AT3G63130.1	GSMUA_Achr10P...	AT5G56210.1	17600715
AT3G63130.1	GSMUA_Achr3P04120_001	AT5G56210.1	17600715
AT3G63130.1	GSMUA_Achr4P01630_001	AT5G56210.1	17600715
AT3G63130.1	GSMUA_Achr10P...	AT5G56210.1	20579133
AT3G63130.1	GSMUA_Achr3P04120_001	AT5G56210.1	20579133
AT3G63130.1	GSMUA_Achr4P01630_001	AT5G56210.1	20579133
AT5G19320.1	GSMUA_Achr10P...	AT4G26455.1	17600715
AT5G19320.1	GSMUA_Achr3P04120_001	AT4G26455.1	17600715
AT5G19320.1	GSMUA_Achr4P01630_001	AT4G26455.1	17600715
AT5G19320.1	GSMUA_Achr1P19080_001	AT5G11390.1	18591351
AT5G19320.1	GSMUA_Achr7P06030_001	AT5G11390.1	18591351
AT5G19320.1	GSMUA_Achr10P...	AT5G56210.1	17600715
AT5G19320.1	GSMUA_Achr3P04120_001	AT5G56210.1	17600715
AT5G19320.1	GSMUA_Achr4P01630_001	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol, plastid	58.01	64.78
CDX93932	Canola	cytosol	10.13	53.91
TraesCS1A01G256200.1	Wheat	cytosol	48.2	53.64
VIT_07s0104g00520.t01	Wine grape	plastid	47.39	53.6
EES05430	Sorghum	cytosol, nucleus, plastid	47.55	53.59
TraesCS1B01G266900.1	Wheat	plastid	48.04	53.36
Zm00001d051112_P001	Maize	plasma membrane	44.93	53.29
Os05t0543200-01	Rice	plasma membrane	47.22	53.12
KRH71426	Soybean	nucleus	46.24	53.1
PGSC0003DMT400086322	Potato	cytosol	46.24	53.0
KRH32020	Soybean	cytosol	46.24	53.0
TraesCS3D01G394300.1	Wheat	cytosol, plastid	47.88	52.89
Solyc09g065190.1.1	Tomato	plastid	46.08	52.81
TraesCS3B01G433100.1	Wheat	cytosol, plastid	47.71	52.71
TraesCS1D01G255600.1	Wheat	cytosol, plastid	47.55	52.43
EES05435	Sorghum	cytosol, plastid	47.55	52.15
Zm00001d052426_P001	Maize	cytosol	11.6	51.82
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	44.28	51.82
HORVU3Hr1G090080.1	Barley	plastid	46.73	51.62
KRG91256	Soybean	endoplasmic reticulum	44.28	50.94
KRH35557	Soybean	endoplasmic reticulum, nucleus	44.28	50.84
CDY02566	Canola	cytosol	16.34	50.51
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	44.44	50.46
TraesCS3A01G400100.1	Wheat	plastid	47.22	49.07
PGSC0003DMT400023310	Potato	plastid	44.28	49.01
Solyc01g079680.2.1	Tomato	plastid	43.95	48.91
AT5G19320.1	Thale cress	cytosol	43.46	48.81
AT3G63130.1	Thale cress	plastid	42.32	48.41
Bra007730.1-P	Field mustard	cytosol, plastid	42.32	48.41
CDY56462	Canola	cytosol, plastid	42.16	48.22
CDX92540	Canola	cytosol	44.12	48.21
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	41.01	47.72
Bra013834.1-P	Field mustard	cytosol	10.13	46.97
CDX89174	Canola	plastid	40.36	45.83
Bra040432.1-P	Field mustard	plastid	40.03	45.71
HORVU1Hr1G063300.3	Barley	plastid	48.37	45.33
Os05t0409200-00	Rice	cytosol	7.68	43.93
CDX76683	Canola	mitochondrion	41.99	43.56
EES07543	Sorghum	cytosol	16.99	41.43
CDX93931	Canola	cytosol	22.06	39.94
AT3G06000.1	Thale cress	cytosol	13.07	37.91
Zm00001d034691_P001	Maize	cytosol	23.04	37.11
Bra020034.1-P	Field mustard	cytosol	13.56	33.74
CDY44911	Canola	cytosol	13.24	32.27
CDY16082	Canola	cytosol	5.88	31.86
Bra026911.1-P	Field mustard	cytosol	6.86	31.82
Bra020788.1-P	Field mustard	cytosol, mitochondrion	12.25	31.78
CDY27720	Canola	cytosol, mitochondrion	11.93	30.04
Zm00001d043604_P002	Maize	cytosol	25.16	28.68
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	8.82	28.27
Zm00001d046105_P001	Maize	peroxisome	24.67	25.68
GSMUA_Achr9P28160_001	Banana	plastid	13.56	13.45

Protein Annotations

Gene3D:1.10.246.200	Gene3D:3.80.10.10	MapMan:35.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EnsemblPlantsGene:GSMUA_Achr8G13660_001	EnsemblPlants:GSMUA_Achr8P13660_001	EnsemblPlants:GSMUA_Achr8T13660_001
InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M0TQ69
PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047
TMHMM:TMhelix	UniParc:UPI0002961D3E	InterPro:WPP_dom	InterPro:WPP_sf	SEG:seg	:

Description

RAN GTPase-activating protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G13660_001]

Coordinates

chr8:-:10400680..10407984

Molecular Weight (calculated)

66808.5 Da

IEP (calculated)

4.911

GRAVY (calculated)

-0.372

Length

612 amino acids

Sequence
(BLAST)

001: MDGSQEFDPH PFTIKLWPPS SSTRMMLVEN MTQNLSSESI FSRKYGLLSK EEAHENAKRI EDECFVAASK HFEKEPDGVG SSAVQFYAKQ TSKLMLEVLK
101: KGPKPKDGEM AAVDRPVKSG EVVFDISGGT RAFIDAEEAR KLLSPLTEQG NSFRKICLSN RSFGIDAAHV AGPILASLKE QLTEVNLSDF IAGRPEEEAL
201: EVMRIFSSAL EGSVLRYLNL SDNALGEKGL IPSTDKLKIL HFHNNMTGDE GAIAISEVLK QIYLSYLNLE DEGAIAIANA LKQSAPSLEG LDITGNDITP
301: KAAPALAGCV AIKKSLRMLI LSENELKDQG AVLIGKALEE GHTQLRELDL STNLIQRVGA RCLAQAVSNK TDFKLLNING NAISDEGIDE VKEILKNGKN
401: SVDVLGPLDE NDVEGEGEED EDEGEKEGAT EEGEERERER ADTLYTGCIG KRKQAIVFLE KEGEHSPTSR TTVMDKVGNV VVDIESLTQP SDNCSGSPKV
501: TKALSRKGSC RMDRRNGEEQ EADEATKKLV VKVFYSQSEQ LKQQPITNKS HVGLPAVANV SNLSDAGDGR TRKLNRFTAI NPKKILLLFA SMSSMGTIIL
601: IYFTLAIYLR GA

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.