Factsheet for GSMUA_Achr1P19080_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P19080_001
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P14260_001
GSMUA_Achr7P06030_001
GSMUA_Achr8P13660_001
GSMUA_Achr9P09500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	GSMUA_Achr11P...	AT3G63130.1	18591351
AT5G11390.1	GSMUA_Achr8P13660_001	AT3G63130.1	18591351
AT5G11390.1	GSMUA_Achr10P...	AT4G26455.1	18591351
AT5G11390.1	GSMUA_Achr3P04120_001	AT4G26455.1	18591351
AT5G11390.1	GSMUA_Achr4P01630_001	AT4G26455.1	18591351
AT5G11390.1	GSMUA_Achr1P19080_001	AT5G11390.1	18591351
AT5G11390.1	GSMUA_Achr7P06030_001	AT5G11390.1	18591351
AT5G11390.1	GSMUA_Achr11P...	AT5G19320.1	18591351
AT5G11390.1	GSMUA_Achr8P13660_001	AT5G19320.1	18591351
AT5G11390.1	GSMUA_Achr4P14260_001	AT5G27940.1	18591351
AT5G11390.1	GSMUA_Achr9P09500_001	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	69.6	63.1
KXG21620	Sorghum	cytosol	45.51	42.35
Os05t0241000-01	Rice	nucleus	45.35	40.81
VIT_14s0083g00730.t01	Wine grape	nucleus	47.01	39.64
KRH18315	Soybean	nucleus	36.38	39.32
TraesCSU01G064900.1	Wheat	cytosol	44.35	39.15
KRG93747	Soybean	nucleus	35.71	39.09
TraesCS7A01G042800.1	Wheat	cytosol	43.85	38.82
TraesCS7D01G038700.1	Wheat	cytosol	43.69	38.68
HORVU3Hr1G057330.1	Barley	cytosol	42.52	38.5
TraesCS3A01G158400.1	Wheat	cytosol	41.86	37.44
TraesCS3D01G166100.1	Wheat	cytosol	40.53	37.31
Zm00001d039272_P003	Maize	cytosol	40.37	37.21
HORVU7Hr1G007940.7	Barley	mitochondrion	44.35	36.88
OQU86053	Sorghum	cytosol, golgi, nucleus	39.7	35.89
VIT_01s0010g00750.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	43.69	35.78
Os01t0235350-00	Rice	cytosol	40.86	35.14
Zm00001d010047_P001	Maize	plastid	43.52	34.98
KRH01441	Soybean	cytosol	37.71	34.92
Solyc02g065660.2.1	Tomato	nucleus, plastid	36.05	34.66
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	40.37	34.57
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	38.37	33.77
AT1G68910.1	Thale cress	cytosol	34.72	33.33
CDX69762	Canola	nucleus	35.71	32.82
KRH75191	Soybean	cytosol	37.04	32.75
KRH71037	Soybean	cytosol	38.37	32.63
PGSC0003DMT400050565	Potato	cytosol, golgi, nucleus	37.87	32.48
Solyc05g010590.2.1	Tomato	nucleus	37.87	32.48
Bra008966.1-P	Field mustard	nucleus	35.38	32.47
CDX97101	Canola	cytosol, golgi, nucleus	35.22	32.12
CDY45838	Canola	cytosol, golgi, nucleus	34.05	31.83
CDX81573	Canola	cytosol	33.22	31.35
CDY33569	Canola	cytosol, golgi, peroxisome	32.72	30.31
Bra004347.1-P	Field mustard	cytosol	33.72	30.25
CDX95976	Canola	cytosol, peroxisome, plastid	18.44	29.68
Bra038339.1-P	Field mustard	nucleus	34.05	28.75
CDX95975	Canola	cytosol	8.31	26.74

Protein Annotations

EnsemblPlants:GSMUA_Achr1P19080_001	EnsemblPlants:GSMUA_Achr1T19080_001	EnsemblPlantsGene:GSMUA_Achr1G19080_001	ncoils:Coil	PANTHER:PTHR35705	SEG:seg
SUPFAM:SSF57997	UniParc:UPI0002960653	UniProt:M0S166	MapMan:20.4.2.2	:	:

Description

Putative WPP domain-interacting tail-anchored protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr1G19080_001]

Coordinates

chr1:+:14248927..14251142

Molecular Weight (calculated)

67849.4 Da

IEP (calculated)

4.576

GRAVY (calculated)

-0.523

Length

602 amino acids

Sequence
(BLAST)

001: MATDDCDDNC LQEDGSLCGE GMNGGNGFEA LTRVELDIAY SSEKLLNLEI LLMLVVDRAN DFEAVSMEYK DISDESVLKA FESDILSGIL DMEVKELQSF
101: MCLLQTEIIE AHQQVSQNEH FEESAAKAEE KLHDAEKSVK KLQDSVADIL DQSSTFIRTL ALCHCETRTD ESEEPDNGHL SSISTKLKPQ SLDQQRHVLQ
201: MLEKSLAREL DFEKKLSDLR YSEEDLKLKL HYAERELYCM EELMEICLER AFEAENAAEI LLGTSEELAG RVQVLQLNLN SSQHREHEMR SKLQESLMKI
301: HAEEAAKERL THAELDLISS KERGASGLKA EDESLLASSE ILSLKDKVRT LEEKLRESDA QLRLAKASVG TSQQQQSALQ SALSQVEKVI EGLKANVLRT
401: ESRAEIAEAK YAELSKTNVE LNEELFFLRN SESEKTNLLE RRCQELHTQL EHAKASVEAL EEQQNGLYAA ISDMQNMIEK LKTKVSKAES RAESAESKVN
501: LLTESNLELN EELGFLRGRL EYLEMSLQQA EGAKTAIAKD IGIRTKTISD LVKKLALERE RLQSQITALT KKNKILAEKC KTKENAHTSL SYNVEALTEL
601: KI

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.