Subcellular Localization
min:
: max
Winner_takes_all: golgi, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g065660.2.1 | Tomato | nucleus, plastid | 82.31 | 89.94 |
| KRG93747 | Soybean | nucleus | 36.99 | 46.0 |
| KRH18315 | Soybean | nucleus | 36.84 | 45.24 |
| VIT_14s0083g00730.t01 | Wine grape | nucleus | 47.08 | 45.1 |
| KRH01441 | Soybean | cytosol | 41.96 | 44.15 |
| GSMUA_Achr1P19080_001 | Banana | nucleus | 33.77 | 38.37 |
| CDX69762 | Canola | nucleus | 36.7 | 38.32 |
| AT5G11390.1 | Thale cress | cytosol, golgi, nucleus | 39.33 | 38.26 |
| Bra008966.1-P | Field mustard | nucleus | 36.7 | 38.26 |
| CDX97101 | Canola | cytosol, golgi, nucleus | 36.84 | 38.18 |
| Os05t0241000-01 | Rice | nucleus | 34.94 | 35.73 |
| KXG21620 | Sorghum | cytosol | 33.19 | 35.09 |
| GSMUA_Achr7P06030_001 | Banana | cytosol, golgi, nucleus | 33.63 | 34.64 |
| TraesCSU01G064900.1 | Wheat | cytosol | 34.5 | 34.6 |
| TraesCS7A01G042800.1 | Wheat | cytosol | 34.06 | 34.26 |
| TraesCS7D01G038700.1 | Wheat | cytosol | 33.92 | 34.12 |
| PGSC0003DMT400050565 | Potato | cytosol, golgi, nucleus | 34.21 | 33.33 |
| Zm00001d039272_P003 | Maize | cytosol | 31.29 | 32.77 |
| HORVU3Hr1G057330.1 | Barley | cytosol | 31.73 | 32.63 |
| HORVU7Hr1G007940.7 | Barley | mitochondrion | 34.5 | 32.6 |
| OQU86053 | Sorghum | cytosol, golgi, nucleus | 31.14 | 31.98 |
| TraesCS3D01G166100.1 | Wheat | cytosol | 30.41 | 31.8 |
| TraesCS3A01G158400.1 | Wheat | cytosol | 30.99 | 31.5 |
| Os01t0235350-00 | Rice | cytosol | 31.43 | 30.71 |
| Zm00001d010047_P001 | Maize | plastid | 32.75 | 29.91 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400068312 | EnsemblPlantsGene:PGSC0003DMG400026559 | EntrezGene:102597196 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0016020 | GO:GO:0016021 | ncoils:Coil | PANTHER:PTHR35705 |
| PANTHER:PTHR35705:SF1 | PGSC:PGSC0003DMG400026559 | RefSeq:XP_006365649.1 | SEG:seg | SUPFAM:SSF57997 | TMHMM:TMhelix |
| UniParc:UPI0002966B18 | UniProt:M1CIU3 | MapMan:20.4.2.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400026559]
Coordinates
chr2:-:24884399..24891114
Molecular Weight (calculated)
77066.0 Da
IEP (calculated)
4.379
GRAVY (calculated)
-0.507
Length
684 amino acids
Sequence
(BLAST)
(BLAST)
001: MDADTVNNAS TSTKGVNTNE VEAESNTVDS LEVLSSSGNV MQEVGSVGEI LTRLELDLAC VSEKLVNLDL FVMHVETRES DFEAFASEKE GTSNDIVEKA
101: IEFDLLSGVL DSEVTELGGL LSSVAIEIDN VRKVISSRGY VDEAFILIEE KLHDSEKSLK QSQDHLLELR GQCTNFHGIM LTSQGDQNWE DSEAADYFNG
201: DALLTPKTKI KMQTVEQQRH ILRMLEKSLA RELDLEKKLT ESRQVEEELE VRLQQEALYM EEEIEDASQR LFEGENAAEV LLGISKSLLG RLQMAHFNLN
301: GTVQKESYLQ SKLQEMEEHL KAKDNLLGKF ESTSKELGDK VKSLEKRLED SEFQLSNYTA SAKKSQELES EILEMEDIIN TLKEKNSEAE RRIDTAETEC
401: KILKEANVEL DKELNFLKSS SSITSERINV LEKQLRDSEL RLQHAVASAE ASQEKQIMLN STIQDMEDLI EDLKSKVSKA KSLMESAEDK CIILSESNSD
501: LNEELTFVRS RLACLESSLR QAEEMKKATA RDINFRSKLI TDLILQLALE RERLEKQISL LIMENKAQKK LFQQKDKVPS PAPPSDGKDT RESMLPKAEL
601: SAATSPNECK EEISKFSSIT NVEENVSGDF MSSESKETDS STRLDASRDI DARQLNWKYV LTAVLVFLIS TVVTFLMQNQ SIQL
101: IEFDLLSGVL DSEVTELGGL LSSVAIEIDN VRKVISSRGY VDEAFILIEE KLHDSEKSLK QSQDHLLELR GQCTNFHGIM LTSQGDQNWE DSEAADYFNG
201: DALLTPKTKI KMQTVEQQRH ILRMLEKSLA RELDLEKKLT ESRQVEEELE VRLQQEALYM EEEIEDASQR LFEGENAAEV LLGISKSLLG RLQMAHFNLN
301: GTVQKESYLQ SKLQEMEEHL KAKDNLLGKF ESTSKELGDK VKSLEKRLED SEFQLSNYTA SAKKSQELES EILEMEDIIN TLKEKNSEAE RRIDTAETEC
401: KILKEANVEL DKELNFLKSS SSITSERINV LEKQLRDSEL RLQHAVASAE ASQEKQIMLN STIQDMEDLI EDLKSKVSKA KSLMESAEDK CIILSESNSD
501: LNEELTFVRS RLACLESSLR QAEEMKKATA RDINFRSKLI TDLILQLALE RERLEKQISL LIMENKAQKK LFQQKDKVPS PAPPSDGKDT RESMLPKAEL
601: SAATSPNECK EEISKFSSIT NVEENVSGDF MSSESKETDS STRLDASRDI DARQLNWKYV LTAVLVFLIS TVVTFLMQNQ SIQL
001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM
Arabidopsis Description
WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.