CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EER97479
EES05430
EES05435
EES07543
EES14314
KXG21620
KXG39905
OQU81760
OQU86053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	EES05430	AT3G63130.1	18591351
AT5G11390.1	EES05435	AT3G63130.1	18591351
AT5G11390.1	EES07543	AT3G63130.1	18591351
AT5G11390.1	EER96942	AT4G26455.1	18591351
AT5G11390.1	EES14314	AT4G26455.1	18591351
AT5G11390.1	OQU81760	AT4G26455.1	18591351
AT5G11390.1	KXG21620	AT5G11390.1	18591351
AT5G11390.1	OQU86053	AT5G11390.1	18591351
AT5G11390.1	EES05430	AT5G19320.1	18591351
AT5G11390.1	EES05435	AT5G19320.1	18591351
AT5G11390.1	EES07543	AT5G19320.1	18591351
AT5G11390.1	EER97479	AT5G27940.1	18591351
AT5G11390.1	KXG39905	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d039272_P003	Maize	cytosol	78.98	80.55
HORVU3Hr1G057330.1	Barley	cytosol	56.76	56.84
TraesCS3A01G158400.1	Wheat	cytosol	56.01	55.42
TraesCS3D01G166100.1	Wheat	cytosol	53.45	54.43
Os01t0235350-00	Rice	cytosol	55.11	52.43
KXG21620	Sorghum	cytosol	46.25	47.6
GSMUA_Achr1P19080_001	Banana	nucleus	35.89	39.7
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	36.04	36.14
Solyc02g065660.2.1	Tomato	nucleus, plastid	31.98	34.03
VIT_14s0083g00730.t01	Wine grape	nucleus	35.29	32.91
KRH18315	Soybean	nucleus	27.48	32.85
KRG93747	Soybean	nucleus	26.88	32.55
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	31.98	31.14
KRH75191	Soybean	cytosol	31.08	30.4
KRH01441	Soybean	cytosol	29.43	30.15
Bra008966.1-P	Field mustard	nucleus	29.58	30.03
CDX95976	Canola	cytosol, peroxisome, plastid	16.82	29.95
CDX69762	Canola	nucleus	29.43	29.92
AT1G68910.1	Thale cress	cytosol	27.63	29.35
CDX97101	Canola	cytosol, golgi, nucleus	28.98	29.24
KRH71037	Soybean	cytosol	31.08	29.24
VIT_01s0010g00750.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	32.13	29.12
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	30.18	28.59
CDY45838	Canola	cytosol, golgi, nucleus	27.18	28.11
CDY33569	Canola	cytosol, golgi, peroxisome	27.33	28.0
Solyc05g010590.2.1	Tomato	nucleus	29.13	27.64
CDX81573	Canola	cytosol	26.43	27.59
Bra004347.1-P	Field mustard	cytosol	27.18	26.97
PGSC0003DMT400050565	Potato	cytosol, golgi, nucleus	28.08	26.64
Bra038339.1-P	Field mustard	nucleus	27.18	25.39
CDX95975	Canola	cytosol	6.61	23.53

Protein Annotations

EnsemblPlants:OQU86053	EnsemblPlantsGene:SORBI_3003G004600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	ncoils:Coil
PANTHER:PTHR35705	PANTHER:PTHR35705:SF1	ProteinID:OQU86053	ProteinID:OQU86053.1	SEG:seg	SUPFAM:SSF57997
TMHMM:TMhelix	UniParc:UPI0009DC87B2	UniProt:A0A1W0VV96	MapMan:20.4.2.2	:	:

Description

hypothetical protein

Coordinates

chr3:+:434030..437025

Molecular Weight (calculated)

74234.5 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.518

Length

666 amino acids

Sequence
(BLAST)

001: MNFHNIDDYF HENSPTQGGK GVAAVSAEAI VERVYHDIAF GTEKLLNLDM LVMEIARQAS DIEPLMRDPH SISAELVDKA FEFDVLHSIV DSEVSELEKL
101: AVSIQTDIGD AETKALGEEP GSRVSDKLCT RKESLKQMQD QISDIRTQLA TFEKAIQPSH GKQRNSEVMG YENGHMSGHT AMQAEDQRNI LQMLQQSIAS
201: KLDLENKLCD SHSVVEDLKM KLHHAEQGSC FLEESIKELY ERMFSAENAS QLLLGTSKEL VGKLNTTQFY LSASIGREGD LKSNEEENLK KLSTNKSTRE
301: TVLEDGDNNA SQEPVQMQVL SPPEFLTLWN KVQQLEELLR DSGSEPQQSS LSRGATEEEQ DTAQSKISTF GNIINDLKLA ITNAESRTQN AEIRCTQLTQ
401: TNVQLNGALN SLKSQGSDRA GLLETKLKES DTQLEHARAS VDAIVEQQGM LRSSMSDMEL LIGDLKEKYL KAETRAESAE SKCSLLTDTN LELGEELSFL
501: RGRVESLENS LHEANQLKVS SAKDITSKTK TIMDLVAKLA LERERLHVQI VTLTKKNRML AQKCKENVRE HTLLCKNVTT TEGELRLSQA KRASNTTQEE
601: VEADEVIAED DESGAWSTPE TVRAIEPTML NWKYISAAVL ALLAAVIVYY YQSDDGVQQL LRQFVG

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.