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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • cytosol 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, golgi
MultiLoc:cytosol
WoLF PSORT:golgi
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G063300.3
HORVU2Hr1G034580.1
HORVU2Hr1G081800.3
HORVU3Hr1G057330.1
HORVU3Hr1G090080.1
HORVU4Hr1G069210.1
HORVU5Hr1G071910.1
HORVU7Hr1G007940.7
HORVU7Hr1G048940.3

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT5G11390.1 HORVU1Hr1G063300.3 AT3G63130.1 18591351
AT5G11390.1 HORVU3Hr1G090080.1 AT3G63130.1 18591351
AT5G11390.1 HORVU2Hr1G081800.3 AT4G26455.1 18591351
AT5G11390.1 HORVU5Hr1G071910.1 AT4G26455.1 18591351
AT5G11390.1 HORVU7Hr1G048940.3 AT4G26455.1 18591351
AT5G11390.1 HORVU3Hr1G057330.1 AT5G11390.1 18591351
AT5G11390.1 HORVU7Hr1G007940.7 AT5G11390.1 18591351
AT5G11390.1 HORVU1Hr1G063300.3 AT5G19320.1 18591351
AT5G11390.1 HORVU3Hr1G090080.1 AT5G19320.1 18591351
AT5G11390.1 HORVU2Hr1G034580.1 AT5G27940.1 18591351
AT5G11390.1 HORVU4Hr1G069210.1 AT5G27940.1 18591351
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS3A01G158400.1 Wheat cytosol 88.57 87.52
TraesCS3D01G166100.1 Wheat cytosol 85.56 87.0
OQU86053 Sorghum cytosol, golgi, nucleus 56.84 56.76
Zm00001d039272_P003 Maize cytosol 55.34 56.36
Os01t0235350-00 Rice cytosol 58.8 55.86
HORVU7Hr1G007940.7 Barley mitochondrion 51.58 47.38
GSMUA_Achr1P19080_001 Banana nucleus 38.5 42.52
GSMUA_Achr7P06030_001 Banana cytosol, golgi, nucleus 38.8 38.86
VIT_14s0083g00730.t01 Wine grape nucleus 36.39 33.89
Solyc02g065660.2.1 Tomato nucleus, plastid 31.73 33.71
KRH18315 Soybean nucleus 28.12 33.57
KRG93747 Soybean nucleus 27.67 33.45
KRH01441 Soybean cytosol 31.13 31.85
PGSC0003DMT400068312 Potato cytosol, golgi, nucleus 32.63 31.73
CDX95976 Canola cytosol, peroxisome, plastid 17.74 31.55
AT1G68910.1 Thale cress cytosol 29.47 31.26
CDX69762 Canola nucleus 30.53 30.99
Bra008966.1-P Field mustard nucleus 30.38 30.79
CDY33569 Canola cytosol, golgi, peroxisome 29.92 30.62
CDY45838 Canola cytosol, golgi, nucleus 29.47 30.43
CDX81573 Canola cytosol 29.17 30.41
AT5G11390.1 Thale cress cytosol, golgi, nucleus 31.88 30.16
CDX97101 Canola cytosol, golgi, nucleus 29.77 30.0
Bra004347.1-P Field mustard cytosol 29.47 29.21
VIT_01s0010g00750.t01 Wine grape endoplasmic reticulum, mitochondrion, plasma membrane, plastid 32.18 29.12
KRH75191 Soybean cytosol 28.57 27.9
KRH71037 Soybean cytosol 29.17 27.4
PGSC0003DMT400050565 Potato cytosol, golgi, nucleus 28.87 27.35
Bra038339.1-P Field mustard nucleus 29.32 27.35
Solyc05g010590.2.1 Tomato nucleus 28.57 27.07
CDX95975 Canola cytosol 7.52 26.74
Protein Annotations
EnsemblPlants:HORVU3Hr1G057330.1EnsemblPlantsGene:HORVU3Hr1G057330GO:GO:0005575GO:GO:0016020GO:GO:0016021ncoils:Coil
PANTHER:PTHR35705PANTHER:PTHR35705:SF1SEG:segSUPFAM:SSF57997TMHMM:TMhelixUniParc:UPI000B46BC0C
UniProt:A0A287L5S3MapMan:20.4.2.2::::
Description
No Description!
Coordinates
chrchr3H:-:430236196..430239372
Molecular Weight (calculated)
74301.1 Da
IEP (calculated)
4.536
GRAVY (calculated)
-0.442
Length
665 amino acids
Sequence
(BLAST)
001: MDFESTQDDY CFQENVLPHG DGSNGAGNSA GVMSRVDLEI EFGSEKLLNL EILVMEVANR ANDIEPLMLD PGSLSTESFE KAFEFDVLYG ILDAEVRELE
101: RLVSYIQIEI GNVEKKVNGE ESEDWLKGKL HGATESLKQM QEVIATIRRE SANFDKALDP SRHKAENSED DAYENGHISS HTTIQDEGQR NVLQMLEQSI
201: ANELDLENKL SDLGVLVEEL KMKLHHVEQG SYLLEESVET ISERMFAAEN ASELFLVASK ELVNRINTMQ YQLSASGCRE SDLKSKLEQS LVQLNTLNGS
301: LKMMQDSGEK SASQDSMQSQ RLSTPEFFTL QHKVQKLEEL LRESCSQLQF VTVSTEGNEK EHNMSQSEMS TFRNIINDIK EAVSKAESRT QMAEARCAEL
401: THANVQLNGE LNHMKTRGSD KAGLSEMDLM ETEAQLEHTM ASVEAISEHQ SMLKSSISDM QHVIEDLKEK YLKAETRAES AESKCTLLTD TNFELSEEIS
501: FLRGRVEGLE NSLHQANQLK LSTAKDIGIK TKTITDLVAK LALERERLHL QIVTLTKKNR MLTQKCKENV NEGTLLSKKV TANEGELRPT NVTGEVVLGS
601: SPMQTKVKAD ALIGEKEAGI TAALDDESGT LETVRPMEPI LLNWKYIFVA FLVLLAAALV HLQLT
Best Arabidopsis Sequence Match ( AT1G68910.2 )
(BLAST)
001: MEEIIREDYF EALSSRNEEE QEMLRMLTKL EIDSAYTSEK LMNLHVLLMH LLAWDNDLEG MGTLDSSPAS FEKALTFDLL CGILESEVKE VDEVLDVLEA
101: QIVDTSYKIS SCKHGNYIVI EGKLGESAES LKQSRGQVSE ITLQLAQLRR TLHYIRNGTS ENEESVELRQ KYALKPSDLR HKNALRMLEK SLSRELELEK
201: KLMEFQQNEE QLKLKLHYTE EVSSRMEEAS EFIWGRFLEA DNSSEVLTGI SKELVGRLQI LQFSLNGSAQ RESELKSKLE DCTVQLEAKD LLVQKLEGTI
301: SENSEIVSEV LTLREYVKSA EQKLKNTDLE LKSVNASKQE ILVHLAEMEN ANESVKENLF EAESRAESGE AKIKELDAAN LELTEELNFL KDADDKKTKK
401: VNSLEKQVRE LEVQVQNSKV SSEANQEQQN MLYSAIWDME TLIEDLKSKA SKAESRTETV EEQCIVLSTT NSELNKDVSF LRQKAKSLEA MLDLANNEKE
501: RYAQEITTRN KVLMDMMLQL SSERERIQEQ LYSLAKENKI LRVNQCSNTY QRNGSYAGDK ELSFHADGHE IEALAESLQA GG
Arabidopsis Description
WIT2WPP domain-interacting tail-anchored protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A8MQR0]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.