Factsheet for GSMUA_Achr7P06030_001

Subcellular Localization

min:

: max

Winner_takes_all: golgi, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr1P19080_001
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr4P14260_001
GSMUA_Achr7P06030_001
GSMUA_Achr8P13660_001
GSMUA_Achr9P09500_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	GSMUA_Achr11P...	AT3G63130.1	18591351
AT5G11390.1	GSMUA_Achr8P13660_001	AT3G63130.1	18591351
AT5G11390.1	GSMUA_Achr10P...	AT4G26455.1	18591351
AT5G11390.1	GSMUA_Achr3P04120_001	AT4G26455.1	18591351
AT5G11390.1	GSMUA_Achr4P01630_001	AT4G26455.1	18591351
AT5G11390.1	GSMUA_Achr1P19080_001	AT5G11390.1	18591351
AT5G11390.1	GSMUA_Achr7P06030_001	AT5G11390.1	18591351
AT5G11390.1	GSMUA_Achr11P...	AT5G19320.1	18591351
AT5G11390.1	GSMUA_Achr8P13660_001	AT5G19320.1	18591351
AT5G11390.1	GSMUA_Achr4P14260_001	AT5G27940.1	18591351
AT5G11390.1	GSMUA_Achr9P09500_001	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P19080_001	Banana	nucleus	63.1	69.6
KXG21620	Sorghum	cytosol	41.27	42.35
Os05t0241000-01	Rice	nucleus	42.17	41.85
TraesCSU01G064900.1	Wheat	cytosol	41.57	40.47
TraesCS7D01G038700.1	Wheat	cytosol	40.51	39.56
KRG93747	Soybean	nucleus	32.68	39.45
TraesCS7A01G042800.1	Wheat	cytosol	40.36	39.41
VIT_14s0083g00730.t01	Wine grape	nucleus	42.32	39.36
HORVU3Hr1G057330.1	Barley	cytosol	38.86	38.8
KRH18315	Soybean	nucleus	32.53	38.78
TraesCS3A01G158400.1	Wheat	cytosol	38.7	38.19
HORVU7Hr1G007940.7	Barley	mitochondrion	41.27	37.85
TraesCS3D01G166100.1	Wheat	cytosol	37.05	37.61
Zm00001d039272_P003	Maize	cytosol	36.14	36.75
Zm00001d010047_P001	Maize	plastid	41.11	36.45
VIT_01s0010g00750.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	40.21	36.33
OQU86053	Sorghum	cytosol, golgi, nucleus	36.14	36.04
Os01t0235350-00	Rice	cytosol	37.95	36.0
KRH01441	Soybean	cytosol	34.79	35.54
KRH75191	Soybean	cytosol	35.84	34.95
KRH71037	Soybean	cytosol	36.9	34.6
CDY45838	Canola	cytosol, golgi, nucleus	33.13	34.16
CDX81573	Canola	cytosol	32.53	33.86
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	34.64	33.63
CDX69762	Canola	nucleus	33.13	33.59
Solyc02g065660.2.1	Tomato	nucleus, plastid	31.63	33.55
Bra008966.1-P	Field mustard	nucleus	33.13	33.54
AT1G68910.1	Thale cress	cytosol	31.48	33.33
PGSC0003DMT400050565	Potato	cytosol, golgi, nucleus	34.94	33.05
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	34.94	33.0
CDX97101	Canola	cytosol, golgi, nucleus	32.53	32.73
Solyc05g010590.2.1	Tomato	nucleus	34.49	32.62
CDY33569	Canola	cytosol, golgi, peroxisome	31.02	31.69
Bra004347.1-P	Field mustard	cytosol	31.48	31.15
CDX95976	Canola	cytosol, peroxisome, plastid	17.32	30.75
Bra038339.1-P	Field mustard	nucleus	31.93	29.73
CDX95975	Canola	cytosol	7.38	26.2

Protein Annotations

EnsemblPlants:GSMUA_Achr7P06030_001	EnsemblPlants:GSMUA_Achr7T06030_001	EnsemblPlantsGene:GSMUA_Achr7G06030_001	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR35705	SEG:seg	SUPFAM:SSF57997	TMHMM:TMhelix	UniParc:UPI00029640D1
UniProt:M0TF43	MapMan:20.4.2.2	:	:	:	:

Description

Putative WPP domain-interacting tail-anchored protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G06030_001]

Coordinates

chr7:+:4458907..4463306

Molecular Weight (calculated)

75206.1 Da

IEP (calculated)

4.512

GRAVY (calculated)

-0.526

Length

664 amino acids

Sequence
(BLAST)

001: MAIDDHDGNC LQEDEALSED RINGGNGAEA LTRVELDVAY SSEKLLNLEM LLMQVADRAH DIESVNMGYE DISDESVMKA FESDILSGIL DMEVNELQSF
101: MSLLQIEIME ARQNFCQGEH MEDCTATVEE KLHDAEESVK KLQDSVADIR EQSSKFGRTL ALFHNETRSD ENEELENDHL TSIKKPQTVD QQRHVLQMLE
201: KSLARELDLE KKLSEYRSNE EDLKIKLHYT ERELYCMEEL MEICLERAFE AENSAELLQG IARELAGKLQ LVQLNLNSSL HREHEMRFNL EENMMQLPAE
301: EAARERLTSK KGILTSAEIL SLREKVIALE EQLRESNVQL QLAKTSAETS QQQQSTLQSD LYQMENVMEG LKANVLRAES KAESAEAKYT ESRKSNIALN
401: EEIVFLRNSE PEKRSLLERR YKESNTQLEH AKASAEALEE QQNVLYAAIT DMQSMIEDLK AKVSKAESRA ENAESKCTLL TETNLELNEE LGCLRGRLEY
501: LETSLHQTEG AKIATAKDIG IRTKIISDLV MKLALERERL QFQISALTKK NKVLLEKCKR KGDAHIPKSY KGPQNGTELG FPKSSIDALT ESSATDFQVE
601: KLAADVPASD KSTEMTASTE ESSGAGPKME TVSFFFLGYP CLVYCSLCIL RISTRIFFNF TVCF

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.