Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P09500_001 | Banana | cytosol | 34.86 | 48.03 |
| KRH15424 | Soybean | nucleus, plastid | 33.71 | 47.97 |
| KRH05617 | Soybean | nucleus | 35.43 | 45.93 |
| Solyc04g078380.1.1 | Tomato | plastid | 38.29 | 44.08 |
| PGSC0003DMT400008558 | Potato | nucleus | 37.71 | 43.42 |
| KRH52049 | Soybean | endoplasmic reticulum | 38.86 | 42.24 |
| KXG39905 | Sorghum | cytosol | 33.71 | 41.84 |
| TraesCS4B01G252900.1 | Wheat | cytosol | 31.43 | 41.67 |
| TraesCS4D01G253000.1 | Wheat | cytosol | 31.43 | 41.04 |
| TraesCS4A01G051500.1 | Wheat | cytosol | 31.43 | 41.04 |
| KRH61362 | Soybean | endoplasmic reticulum | 37.71 | 40.99 |
| VIT_18s0001g09670.t01 | Wine grape | nucleus | 37.71 | 40.49 |
| Zm00001d048123_P001 | Maize | cytosol | 32.57 | 40.14 |
| HORVU4Hr1G069210.1 | Barley | cytosol | 31.43 | 39.86 |
| Zm00001d028043_P001 | Maize | mitochondrion | 32.57 | 39.58 |
| TraesCS2A01G183600.1 | Wheat | nucleus | 34.86 | 36.97 |
| Os03t0209000-01 | Rice | cytosol | 32.57 | 36.77 |
| TraesCS2B01G210200.1 | Wheat | nucleus | 34.29 | 36.59 |
| AT5G43070.1 | Thale cress | cytosol | 32.0 | 36.13 |
| TraesCS2D01G191500.1 | Wheat | nucleus | 33.71 | 35.98 |
| Os10t0337700-01 | Rice | plastid | 28.57 | 35.71 |
| Zm00001d022025_P001 | Maize | extracellular, mitochondrion | 33.71 | 35.54 |
| EER97479 | Sorghum | nucleus | 34.29 | 34.68 |
| CDY06758 | Canola | nucleus | 32.57 | 34.34 |
| Bra040752.1-P | Field mustard | nucleus | 32.57 | 34.34 |
| CDY66769 | Canola | nucleus | 33.14 | 33.53 |
| CDY17041 | Canola | nucleus | 32.0 | 32.37 |
| Bra040794.1-P | Field mustard | nucleus | 32.0 | 32.37 |
| CDY47600 | Canola | nucleus | 32.57 | 32.2 |
| Zm00001d006756_P001 | Maize | mitochondrion | 32.0 | 32.18 |
| AT1G47200.1 | Thale cress | nucleus | 31.43 | 30.56 |
| AT5G27940.1 | Thale cress | nucleus | 25.71 | 28.66 |
| HORVU2Hr1G034580.1 | Barley | cytosol, nucleus | 33.71 | 28.1 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P14260_001 | EnsemblPlants:GSMUA_Achr4T14260_001 | EnsemblPlantsGene:GSMUA_Achr4G14260_001 | Gene3D:1.10.246.200 | InterPro:IPR038214 | InterPro:WPP_dom |
| InterPro:WPP_sf | PANTHER:PTHR34362 | PFAM:PF13943 | SEG:seg | UniParc:UPI000296783B | UniProt:M0SNU1 |
| MapMan:35.1 | : | : | : | : | : |
Description
Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G14260_001]
Coordinates
chr4:+:10672318..10676535
Molecular Weight (calculated)
18608.8 Da
IEP (calculated)
4.430
GRAVY (calculated)
-0.187
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEDGEAAKP HGDEVPVKGG NEAEPSAAVE APVPPPSSGL PPVSLNIWPP SQRTRDAVIQ RLIDTLSSSS VLTKRYGVVP VDEASATARL IEQEAFDFAD
101: SDGVRASASI DDGLEVLQIY SKEISKRMIE SVKSRASPVN LSRYTGVSFV LSSAFGCFSD SSLLALANMD ERRSL
101: SDGVRASASI DDGLEVLQIY SKEISKRMIE SVKSRASPVN LSRYTGVSFV LSSAFGCFSD SSLLALANMD ERRSL
001: MAETAETINT TISSPPPESE SSTTISAMTD PTSQEAASKD TDLTKEAESE KKPGGISLRI WPPTQKTRDA VLNRLIETLS TESILSKRYG TLKSDDATTV
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA
Arabidopsis Description
WPP2WPP domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C500]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.