Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH15424 | Soybean | nucleus, plastid | 77.78 | 85.37 |
| KRH52049 | Soybean | endoplasmic reticulum | 66.67 | 55.9 |
| KRH61362 | Soybean | endoplasmic reticulum | 65.19 | 54.66 |
| Solyc04g078380.1.1 | Tomato | plastid | 54.07 | 48.03 |
| PGSC0003DMT400008558 | Potato | nucleus | 54.07 | 48.03 |
| GSMUA_Achr9P09500_001 | Banana | cytosol | 44.44 | 47.24 |
| Zm00001d048123_P001 | Maize | cytosol | 47.41 | 45.07 |
| TraesCS4D01G253000.1 | Wheat | cytosol | 43.7 | 44.03 |
| TraesCS4A01G051500.1 | Wheat | cytosol | 43.7 | 44.03 |
| KXG39905 | Sorghum | cytosol | 45.93 | 43.97 |
| TraesCS4B01G252900.1 | Wheat | cytosol | 42.96 | 43.94 |
| HORVU4Hr1G069210.1 | Barley | cytosol | 44.44 | 43.48 |
| Zm00001d028043_P001 | Maize | mitochondrion | 45.93 | 43.06 |
| VIT_18s0001g09670.t01 | Wine grape | nucleus | 51.11 | 42.33 |
| CDY06758 | Canola | nucleus | 49.63 | 40.36 |
| Bra040752.1-P | Field mustard | nucleus | 49.63 | 40.36 |
| CDY66769 | Canola | nucleus | 50.37 | 39.31 |
| Bra040794.1-P | Field mustard | nucleus | 50.37 | 39.31 |
| Os10t0337700-01 | Rice | plastid | 40.0 | 38.57 |
| CDY47600 | Canola | nucleus | 50.37 | 38.42 |
| CDY17041 | Canola | nucleus | 48.89 | 38.15 |
| AT5G43070.1 | Thale cress | cytosol | 43.7 | 38.06 |
| Os03t0209000-01 | Rice | cytosol | 42.96 | 37.42 |
| TraesCS2A01G183600.1 | Wheat | nucleus | 45.19 | 36.97 |
| AT1G47200.1 | Thale cress | nucleus | 48.89 | 36.67 |
| TraesCS2B01G210200.1 | Wheat | nucleus | 43.7 | 35.98 |
| TraesCS2D01G191500.1 | Wheat | nucleus | 43.7 | 35.98 |
| Zm00001d022025_P001 | Maize | extracellular, mitochondrion | 43.7 | 35.54 |
| GSMUA_Achr4P14260_001 | Banana | cytosol | 45.93 | 35.43 |
| EER97479 | Sorghum | nucleus | 42.96 | 33.53 |
| Zm00001d006756_P001 | Maize | mitochondrion | 42.96 | 33.33 |
| HORVU2Hr1G034580.1 | Barley | cytosol, nucleus | 45.19 | 29.05 |
| AT5G27940.1 | Thale cress | nucleus | 33.33 | 28.66 |
Protein Annotations
| EMBL:ACUP02010763 | EMBL:AF118115 | EnsemblPlants:KRH05617 | EnsemblPlantsGene:GLYMA_17G237500 | EntrezGene:547538 | Gene3D:1.10.246.200 |
| InterPro:IPR038214 | InterPro:WPP_dom | InterPro:WPP_sf | PANTHER:PTHR34362 | PANTHER:PTHR34362:SF1 | PFAM:PF13943 |
| ProteinID:KRH05617 | ProteinID:KRH05617.1 | SEG:seg | UniParc:UPI00000A4EE4 | UniProt:Q9M7N4 | MapMan:35.1 |
Description
hypothetical protein
Coordinates
chr17:+:39275410..39276430
Molecular Weight (calculated)
14044.2 Da
IEP (calculated)
4.333
GRAVY (calculated)
-0.327
Length
135 amino acids
Sequence
(BLAST)
(BLAST)
001: MSDTETTPEQ PSTPPQTEAP PQPDPSAAVS FSIWPPTQRT RDAVVKRLIE TLSAPSVLSK RYGTLSSDEA SAAARQIEDE AFCAATAASA SAAADGIETL
101: QVYSKEISKR MLDTVKARAP PSPAAVEGVA AAVSD
101: QVYSKEISKR MLDTVKARAP PSPAAVEGVA AAVSD
001: MAETETESIT TSSPPPISET ENSTTLPTTE TEKNPNPVTI SLRIWPPTQK TRDAVINRLI ETLSTESILS KRFGSLESEE ASSVAKSIED EAYAIASATV
101: FGDDDGIEIL KAYSKEISKR MLESVKAKSN VASPPPKDGD GIESAVDSKI DSSEA
101: FGDDDGIEIL KAYSKEISKR MLESVKAKSN VASPPPKDGD GIESAVDSKI DSSEA
Arabidopsis Description
WPP1WPP domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMH6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.