CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93747
KRH01441
KRH18315
KRH56393
KRH62532
KRH66324
KRH71037
KRH75191
KRH77981

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G47200.1	KRH71037	AT1G68910.1	18591351
AT1G47200.1	KRH75191	AT1G68910.1	18591351
AT1G47200.1	KRH56393	AT4G26455.1	17600715
AT1G47200.1	KRH62532	AT4G26455.1	17600715
AT1G47200.1	KRG93747	AT5G11390.1	18591351
AT1G47200.1	KRH01441	AT5G11390.1	18591351
AT1G47200.1	KRH18315	AT5G11390.1	18591351
AT1G47200.1	KRH66324	AT5G25070.1	21798944
AT1G47200.1	KRH77981	AT5G25070.1	21798944
AT1G47200.1	KRH56393	AT5G56210.1	17600715
AT1G47200.1	KRH62532	AT5G56210.1	17600715
AT5G27940.1	KRG93747	AT5G11390.1	18591351
AT5G27940.1	KRH01441	AT5G11390.1	18591351
AT5G27940.1	KRH18315	AT5G11390.1	18591351
AT5G43070.1	KRH56393	AT4G26455.1	17600715
AT5G43070.1	KRH62532	AT4G26455.1	17600715
AT5G43070.1	KRH56393	AT5G56210.1	17600715
AT5G43070.1	KRH62532	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH52049	Soybean	endoplasmic reticulum	86.96	86.96
KRH05617	Soybean	nucleus	54.66	65.19
KRH15424	Soybean	nucleus, plastid	49.07	64.23
PGSC0003DMT400008558	Potato	nucleus	46.58	49.34
Solyc04g078380.1.1	Tomato	plastid	45.96	48.68
VIT_18s0001g09670.t01	Wine grape	nucleus	49.07	48.47
TraesCS4B01G252900.1	Wheat	cytosol	36.65	44.7
GSMUA_Achr9P09500_001	Banana	cytosol	34.78	44.09
TraesCS4A01G051500.1	Wheat	cytosol	36.65	44.03
HORVU4Hr1G069210.1	Barley	cytosol	37.27	43.48
TraesCS4D01G253000.1	Wheat	cytosol	36.02	43.28
Zm00001d048123_P001	Maize	cytosol	37.27	42.25
CDY17041	Canola	nucleus	45.34	42.2
Bra040794.1-P	Field mustard	nucleus	45.34	42.2
AT5G43070.1	Thale cress	cytosol	40.37	41.94
KXG39905	Sorghum	cytosol	36.65	41.84
Zm00001d028043_P001	Maize	mitochondrion	37.27	41.67
CDY47600	Canola	nucleus	44.72	40.68
CDY06758	Canola	nucleus	41.61	40.36
Bra040752.1-P	Field mustard	nucleus	41.61	40.36
CDY66769	Canola	nucleus	42.24	39.31
Os03t0209000-01	Rice	cytosol	37.27	38.71
AT1G47200.1	Thale cress	nucleus	42.86	38.33
GSMUA_Achr4P14260_001	Banana	cytosol	40.99	37.71
Zm00001d006756_P001	Maize	mitochondrion	40.37	37.36
Os10t0337700-01	Rice	plastid	31.68	36.43
EER97479	Sorghum	nucleus	39.13	36.42
TraesCS2B01G210200.1	Wheat	nucleus	36.02	35.37
Zm00001d022025_P001	Maize	extracellular, mitochondrion	36.02	34.94
TraesCS2D01G191500.1	Wheat	nucleus	35.4	34.76
TraesCS2A01G183600.1	Wheat	nucleus	35.4	34.55
AT5G27940.1	Thale cress	nucleus	27.33	28.03
HORVU2Hr1G034580.1	Barley	cytosol, nucleus	35.4	27.14

Protein Annotations

EMBL:ACUP02002162	EnsemblPlants:KRH61362	EnsemblPlantsGene:GLYMA_04G043200	EntrezGene:100782080	Gene3D:1.10.246.200	InterPro:IPR038214
InterPro:WPP_dom	InterPro:WPP_sf	PANTHER:PTHR34362	PFAM:PF13943	ProteinID:KRH61362	ProteinID:KRH61362.1
SEG:seg	UniParc:UPI000189D5D4	UniProt:A0A0R0K7S9	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr4:-:3474289..3476309

Molecular Weight (calculated)

16478.7 Da

IEP (calculated)

4.037

GRAVY (calculated)

-0.433

Length

161 amino acids

Sequence
(BLAST)

001: MSDPENTPAP QSEQDSSSPP PAQDQPVAAD AKLGPAGVSF SIWPPTQRTR DAVITRLIET LSSPSVLSKR YGTMSPDEAS TAARQIEDQA FSVAASSAAS
101: DNDGIEILQV YSKEISKRML DTVKAKSTTA SAAVDIGTPA SDAAPAPAAD GDSAAGAESE T

Best Arabidopsis Sequence Match ( AT1G47200.1 )
(BLAST)

001: MAETAETINT TISSPPPESE SSTTISAMTD PTSQEAASKD TDLTKEAESE KKPGGISLRI WPPTQKTRDA VLNRLIETLS TESILSKRYG TLKSDDATTV
101: AKLIEEEAYG VASNAVSSDD DGIKILELYS KEISKRMLES VKARSNASVG NGSVEDANTD ASEVSKDDAG PASEEEKSEA

Arabidopsis Description

WPP2WPP domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9C500]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.