CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91256
KRG93747
KRH01441
KRH05617
KRH15424
KRH18315
KRH35557
KRH52049
KRH56393
KRH61362
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	KRH56393	AT4G26455.1	18591351
AT5G11390.1	KRH62532	AT4G26455.1	18591351
AT5G11390.1	KRG93747	AT5G11390.1	18591351
AT5G11390.1	KRH01441	AT5G11390.1	18591351
AT5G11390.1	KRH18315	AT5G11390.1	18591351
AT5G11390.1	KRG91256	AT5G19320.1	18591351
AT5G11390.1	KRH35557	AT5G19320.1	18591351
AT5G11390.1	KRH05617	AT5G27940.1	18591351
AT5G11390.1	KRH15424	AT5G27940.1	18591351
AT5G11390.1	KRH52049	AT5G27940.1	18591351
AT5G11390.1	KRH61362	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93747	Soybean	nucleus	86.0	87.09
KRH01441	Soybean	cytosol	60.68	52.0
VIT_14s0083g00730.t01	Wine grape	nucleus	50.81	39.64
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	45.24	36.84
Solyc02g065660.2.1	Tomato	nucleus, plastid	40.93	36.42
GSMUA_Achr1P19080_001	Banana	nucleus	39.32	36.38
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	38.78	32.53
Bra008966.1-P	Field mustard	nucleus	37.7	32.01
CDX69762	Canola	nucleus	37.52	31.91
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	40.22	31.86
CDX97101	Canola	cytosol, golgi, nucleus	37.34	31.52
KRH71037	Soybean	cytosol	38.78	30.51
Os05t0241000-01	Rice	nucleus	36.62	30.49
KRH75191	Soybean	cytosol	37.16	30.4
KXG21620	Sorghum	cytosol	34.65	29.83
TraesCS7D01G038700.1	Wheat	cytosol	35.73	29.26
TraesCSU01G064900.1	Wheat	cytosol	35.73	29.18
TraesCS7A01G042800.1	Wheat	cytosol	35.37	28.97
HORVU3Hr1G057330.1	Barley	cytosol	33.57	28.12
Zm00001d039272_P003	Maize	cytosol	32.85	28.02
TraesCS3D01G166100.1	Wheat	cytosol	32.67	27.83
TraesCS3A01G158400.1	Wheat	cytosol	33.57	27.79
HORVU7Hr1G007940.7	Barley	mitochondrion	35.91	27.62
OQU86053	Sorghum	cytosol, golgi, nucleus	32.85	27.48
Os01t0235350-00	Rice	cytosol	32.85	26.14
Zm00001d010047_P001	Maize	plastid	33.39	24.83

Protein Annotations

EMBL:ACUP02008057	EnsemblPlants:KRH18315	EnsemblPlantsGene:GLYMA_13G050900	EntrezGene:100810969	ncoils:Coil	PANTHER:PTHR35705
PANTHER:PTHR35705:SF1	ProteinID:KRH18314.1	ProteinID:KRH18315	ProteinID:KRH18315.1	ProteinID:KRH18316.1	SEG:seg
SUPFAM:SSF57997	UniParc:UPI000233AC8B	UniProt:K7LXQ5	MapMan:20.4.2.2	:	:

Description

hypothetical protein

Coordinates

chr13:-:14730756..14736198

Molecular Weight (calculated)

62895.2 Da

IEP (calculated)

4.457

GRAVY (calculated)

-0.525

Length

557 amino acids

Sequence
(BLAST)

001: MSTEIAEHDG RVVDLEGGVV SSSSGNVMGD LVDVYSTMLK NLDLGLACFS EKVFNLSNFL MHVETMECEF EALEKEDHIG YLEKGLEFDL LSGVFDSEVR
101: ELEGVLDTLQ GGVGEARDWV SSCTHLGEAF VAMQEKLVGY EQRLKQSEEE FNDIKMQSVS FQRTLPSLKK EENGNDDASE IITEDDKSLS ANAEIRLQTV
201: EQQRHILRML EKSLAREMDL EKDINDSREI QENLRLRMFF SEQELDNMEE EAIDVWERWL EADNTSEILL GISQGLLGRL HISQFSLNGL SHRESELRAN
301: LKDAEDKLTF SNSEASALSN KVSSLEKQLK ESEFQLLNAK ASADEYQKQY NVQCSEARDM GNIIVELKEA VSNAESRAIS AETKCQLLTE TNSKLDEELA
401: LLRGATTRAE LLERKLKESN LRLQKTVASA KASQEKQSNL YSTIRDMENV IKDLKSKVSK AQGRADSAED NCIILSESNA ELNEELSFLR SRLESLEGSL
501: QREEEVKMAT VEDIGKQAKV FKKLVTQLAV ERERLKQQIS SLARENKILV LKLKQTC

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [cytosol,nucleus,golgi]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.