CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG91256
KRG93747
KRH01441
KRH05617
KRH15424
KRH18315
KRH35557
KRH52049
KRH56393
KRH61362
KRH62532

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G11390.1	KRH56393	AT4G26455.1	18591351
AT5G11390.1	KRH62532	AT4G26455.1	18591351
AT5G11390.1	KRG93747	AT5G11390.1	18591351
AT5G11390.1	KRH01441	AT5G11390.1	18591351
AT5G11390.1	KRH18315	AT5G11390.1	18591351
AT5G11390.1	KRG91256	AT5G19320.1	18591351
AT5G11390.1	KRH35557	AT5G19320.1	18591351
AT5G11390.1	KRH05617	AT5G27940.1	18591351
AT5G11390.1	KRH15424	AT5G27940.1	18591351
AT5G11390.1	KRH52049	AT5G27940.1	18591351
AT5G11390.1	KRH61362	AT5G27940.1	18591351

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93747	Soybean	nucleus	53.08	62.73
KRH18315	Soybean	nucleus	52.0	60.68
VIT_14s0083g00730.t01	Wine grape	nucleus	49.23	44.82
Solyc02g065660.2.1	Tomato	nucleus, plastid	40.92	42.49
PGSC0003DMT400068312	Potato	cytosol, golgi, nucleus	44.15	41.96
AT5G11390.1	Thale cress	cytosol, golgi, nucleus	40.92	37.84
GSMUA_Achr1P19080_001	Banana	nucleus	34.92	37.71
Bra008966.1-P	Field mustard	nucleus	38.0	37.65
CDX69762	Canola	nucleus	37.85	37.56
CDX97101	Canola	cytosol, golgi, nucleus	37.23	36.67
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	35.54	34.79
KRH75191	Soybean	cytosol	36.15	34.51
Os05t0241000-01	Rice	nucleus	35.08	34.08
KRH71037	Soybean	cytosol	36.62	33.62
KXG21620	Sorghum	cytosol	32.92	33.08
TraesCS7D01G038700.1	Wheat	cytosol	33.85	32.35
TraesCSU01G064900.1	Wheat	cytosol	33.54	31.96
TraesCS7A01G042800.1	Wheat	cytosol	33.23	31.76
Zm00001d039272_P003	Maize	cytosol	31.54	31.39
HORVU3Hr1G057330.1	Barley	cytosol	31.85	31.13
TraesCS3A01G158400.1	Wheat	cytosol	32.0	30.91
TraesCS3D01G166100.1	Wheat	cytosol	30.92	30.73
HORVU7Hr1G007940.7	Barley	mitochondrion	33.38	29.97
OQU86053	Sorghum	cytosol, golgi, nucleus	30.15	29.43
Os01t0235350-00	Rice	cytosol	31.69	29.43
Zm00001d010047_P001	Maize	plastid	33.38	28.97

Protein Annotations

EMBL:ACUP02011514	EnsemblPlants:KRH01441	EnsemblPlantsGene:GLYMA_18G276900	EntrezGene:100780055	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	ncoils:Coil	PANTHER:PTHR35705	PANTHER:PTHR35705:SF1	ProteinID:KRH01441	ProteinID:KRH01441.1
SEG:seg	SUPFAM:SSF57997	TMHMM:TMhelix	UniParc:UPI00023D8EDB	UniProt:K7MV43	MapMan:20.4.2.2

Description

hypothetical protein

Coordinates

chr18:+:55885009..55890555

Molecular Weight (calculated)

72958.1 Da

IEP (calculated)

4.298

GRAVY (calculated)

-0.427

Length

650 amino acids

Sequence
(BLAST)

001: MDTQSGEDTV DIDLGGVSSS GEAIGDLGDD IVTVLTGLEL NVACFSEKVA NFSNFVMHLE TLGFELEGLD LEKEDNDVDN MDCVGKFLEF DLLCGVLGSE
101: IVELDRFLDT LHAEIADSGE RVASCKTWQD KLVDSEQCLR QSEMQFSEIK KQSASFERTL SSYKRGGNDN VEEGEIILED DESLNVSTVI NMQTPEQQRH
201: VLRMLEKSLA NEIDLEKNFI DSRQIEEKLK QKMVSLEQEL ILMEEEATDA CERWLEADNA SEILTGISKQ LLGRLQISQF NLNGLSQRES ELRTKLETCI
301: EQLKEKDVVS DKIEQLNDKL ILANSQVVAL SVEVCSLEKQ LKESECQVLN VKASADEYQK QYNILCSEVR DMEEVIVELK ENVSNAESRA NTAESLCKLL
401: TETNDELNKQ LALLKDGGGK SERVESLERQ LRESDLQLQQ AVASAEASQE KQSMLYSTIK DMEHVIKDLK SKVSKAESRA DSAEEKCIIL SESNSDLNEE
501: LNFSRSRLEC LEGSLHQVEE AKVASAKDIG KQTKVFKNLV MQLAVERERL NKQLSSLASE NKILVVKLKQ TNKHPSQEVT VTFATDHEVD RTWKNSSTND
601: NEVKFTDTMP DAGTVRRIDA GVLNFKHLFM LSVLVLLFSA VTYLNVDANL

Best Arabidopsis Sequence Match ( AT5G11390.1 )
(BLAST)

001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM

Arabidopsis Description

WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.