Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G166100.1 | Wheat | cytosol | 92.27 | 94.95 |
| HORVU3Hr1G057330.1 | Barley | cytosol | 87.52 | 88.57 |
| Zm00001d039272_P003 | Maize | cytosol | 55.72 | 57.43 |
| Os01t0235350-00 | Rice | cytosol | 58.4 | 56.14 |
| OQU86053 | Sorghum | cytosol, golgi, nucleus | 55.42 | 56.01 |
| TraesCS7A01G042800.1 | Wheat | cytosol | 52.01 | 51.47 |
| GSMUA_Achr1P19080_001 | Banana | nucleus | 37.44 | 41.86 |
| GSMUA_Achr7P06030_001 | Banana | cytosol, golgi, nucleus | 38.19 | 38.7 |
| KRH18315 | Soybean | nucleus | 27.79 | 33.57 |
| VIT_14s0083g00730.t01 | Wine grape | nucleus | 35.36 | 33.33 |
| KRG93747 | Soybean | nucleus | 27.19 | 33.27 |
| Solyc02g065660.2.1 | Tomato | nucleus, plastid | 30.91 | 33.23 |
| KRH01441 | Soybean | cytosol | 30.91 | 32.0 |
| PGSC0003DMT400068312 | Potato | cytosol, golgi, nucleus | 31.5 | 30.99 |
| CDX69762 | Canola | nucleus | 29.57 | 30.38 |
| AT1G68910.1 | Thale cress | cytosol | 28.23 | 30.3 |
| AT5G11390.1 | Thale cress | cytosol, golgi, nucleus | 31.65 | 30.3 |
| CDX95976 | Canola | cytosol, peroxisome, plastid | 16.79 | 30.21 |
| Bra008966.1-P | Field mustard | nucleus | 29.42 | 30.18 |
| CDX97101 | Canola | cytosol, golgi, nucleus | 29.42 | 30.0 |
| CDY33569 | Canola | cytosol, golgi, peroxisome | 28.83 | 29.85 |
| CDY45838 | Canola | cytosol, golgi, nucleus | 28.53 | 29.81 |
| CDX81573 | Canola | cytosol | 27.93 | 29.47 |
| VIT_01s0010g00750.t01 | Wine grape | endoplasmic reticulum, mitochondrion, plasma membrane, plastid | 31.5 | 28.84 |
| Bra004347.1-P | Field mustard | cytosol | 28.08 | 28.17 |
| PGSC0003DMT400050565 | Potato | cytosol, golgi, nucleus | 28.08 | 26.92 |
| Solyc05g010590.2.1 | Tomato | nucleus | 27.93 | 26.78 |
| KRH75191 | Soybean | cytosol | 27.04 | 26.73 |
| KRH71037 | Soybean | cytosol | 27.93 | 26.55 |
| Bra038339.1-P | Field mustard | nucleus | 28.08 | 26.51 |
| CDX95975 | Canola | cytosol | 6.84 | 24.6 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G158400.1 | EnsemblPlantsGene:TraesCS3A01G158400 | ncoils:Coil | PANTHER:PTHR35705 | PANTHER:PTHR35705:SF1 | SEG:seg |
| SUPFAM:SSF57997 | TMHMM:TMhelix | MapMan:20.4.2.2 | : | : | : |
Description
No Description!
Coordinates
chr3A:-:156230314..156234308
Molecular Weight (calculated)
75289.7 Da
IEP (calculated)
4.694
GRAVY (calculated)
-0.390
Length
673 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFQSTQGNY CFHENVLLHG DGSNGAGNPA DVMSRVDLEI QFGSEKLLNL EMLVMEVADR ANDIEPLMLD PGSLSTESLE NAFEFDLLYG ILDAEVRELE
101: RLISYIQIDI GNIEKKLNGE ESEGWLKGKL HAAMDSLKQM QEVIATIRRE FANFEKALDP SHRKAGNSEG GAYENGHVSS HTTIQAEGQR NVLQMLEQSI
201: ANELDLEKKL SDLGVLVEEL KMKLHHVEHG SYFLEESVEA ISERMFAAEN ASELFLVTSK ELVNRINTMQ YQLSASGCRE SDLKAKLEQS LVQLNALNGS
301: LEMMQNGGEE NASQDSMQRQ RLSTPEFFAL QHKVQKLEEW LRESCSQLQF VTVSTEGNEK EQNMSPSEIS RFRNIINDIK DAVSKAESRT QKAEARCAEL
401: THTNVQLNGE LNHMKTRGSD KAGLLEMDLM ETEAQLEHTV ASVEAISEHQ SMLKSSISDM QHVIEDLKDK YLKAETRAEN AESKCTLLTD TKFELSEEIS
501: FLRGRVGGLE NSLRQANQLK LSTAKDIGIK TKTITDLVAK LALERERLHL QIVTLTRKNR MLTQKCKENV NEGTLLSKKV TANEGELRPT GVIEEVLLDS
601: SSMQTKVKAD ALIGEKEAGI TAVLDDESCT LETVRSIEPT LLNWKYIFVA FLFLLAAALV HLQLTYPVLP GSM
101: RLISYIQIDI GNIEKKLNGE ESEGWLKGKL HAAMDSLKQM QEVIATIRRE FANFEKALDP SHRKAGNSEG GAYENGHVSS HTTIQAEGQR NVLQMLEQSI
201: ANELDLEKKL SDLGVLVEEL KMKLHHVEHG SYFLEESVEA ISERMFAAEN ASELFLVTSK ELVNRINTMQ YQLSASGCRE SDLKAKLEQS LVQLNALNGS
301: LEMMQNGGEE NASQDSMQRQ RLSTPEFFAL QHKVQKLEEW LRESCSQLQF VTVSTEGNEK EQNMSPSEIS RFRNIINDIK DAVSKAESRT QKAEARCAEL
401: THTNVQLNGE LNHMKTRGSD KAGLLEMDLM ETEAQLEHTV ASVEAISEHQ SMLKSSISDM QHVIEDLKDK YLKAETRAEN AESKCTLLTD TKFELSEEIS
501: FLRGRVGGLE NSLRQANQLK LSTAKDIGIK TKTITDLVAK LALERERLHL QIVTLTRKNR MLTQKCKENV NEGTLLSKKV TANEGELRPT GVIEEVLLDS
601: SSMQTKVKAD ALIGEKEAGI TAVLDDESCT LETVRSIEPT LLNWKYIFVA FLFLLAAALV HLQLTYPVLP GSM
001: METETEHDRT VSVDDNDSLV PEPSSTKESF FEDLSLTGQV MNPQLSSAGE VLTKVELDFA FVSEKLVNLS LLTMQLGTRE NDFESFVSKK EEDEEEPSSN
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM
101: VDDDDDSAEK ALEFDLLSSI LNSEVKELES LLGFLQNEIQ SARVMISPFQ HDGEAFLDLE GKLNDTEQSL GQLMEQVVEM KKQSSNFQRL SSGLDEQGSW
201: SGGQTSVSQN DGEFGDLSAK INMQTADQQR NVLRMLEKSL AKEMELEKKL SESRNTEREL EMKLYSSEQD VVYMEEVTED AFSRWLEADN AAEVFKGTSK
301: EMSGKLQILQ FNLSGSFKRE DNLKSKLVDS KERLEAKECA LHKLDSSNAR LADFLVAQTE GLKESLQEAE EKLILLNTEN STLSEKVSSL EEQLNEYGIQ
401: TEDADATSGA LITDLERINE ELKDKLAKTE ARAEETESKC KILEESKKEL QDELGNFRDK GFTIHKLASL EKHLRDSDLQ LEHAVAAVEA SKEKQNLLYS
501: TVSDMEDVIE DLKSKVLKAE NRADITEEKL IMVSESNAEV NEELKFFKGR LKEGEKYLQQ AEERKLRTAK DIGVHNKIMK KLVMQLAAER ERLHKQITNL
601: SRENCVLMVK LKKVGKTGYM ESGNGSEVSP KSDQNASSCH QGSRLQATFI SLTNPEEEET GSKSDIGSVR RLDVGALRFK HILVAILVIL ISSIAYVISQ
701: QNM
Arabidopsis Description
WIT1WPP domain-interacting tail-anchored protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7E5]
SUBAcon: [golgi,nucleus,cytosol]
SUBAcon: [golgi,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.