CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, golgi, cytosol

Predictor Summary:

nucleus 1
cytosol 1
mitochondrion 1
golgi 1
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, golgi, peroxisome
Any Predictor:	cytosol, golgi, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	peroxisome

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95976	Canola	cytosol, peroxisome, plastid	52.31	90.91
CDX95975	Canola	cytosol	25.38	88.24
CDY45838	Canola	cytosol, golgi, nucleus	76.0	76.71
AT1G68910.1	Thale cress	cytosol	73.69	76.4
CDX81573	Canola	cytosol	74.92	76.33
KRH75191	Soybean	cytosol	42.0	40.09
KRH71037	Soybean	cytosol	42.15	38.7
VIT_01s0010g00750.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	42.92	37.96
PGSC0003DMT400050565	Potato	cytosol, golgi, nucleus	38.46	35.61
Solyc05g010590.2.1	Tomato	nucleus	38.15	35.33
GSMUA_Achr1P19080_001	Banana	nucleus	30.31	32.72
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	31.69	31.02
CDX69762	Canola	nucleus	31.23	30.99
CDX97101	Canola	cytosol, golgi, nucleus	30.92	30.45
HORVU3Hr1G057330.1	Barley	cytosol	30.62	29.92
KXG21620	Sorghum	cytosol	29.23	29.37
Os05t0241000-01	Rice	nucleus	29.69	28.85
TraesCS3A01G158400.1	Wheat	cytosol	29.85	28.83
Os01t0235350-00	Rice	cytosol	30.92	28.71
Zm00001d039272_P003	Maize	cytosol	28.31	28.18
TraesCSU01G064900.1	Wheat	cytosol	29.38	28.01
TraesCS7A01G042800.1	Wheat	cytosol	29.08	27.79
TraesCS3D01G166100.1	Wheat	cytosol	27.85	27.68
OQU86053	Sorghum	cytosol, golgi, nucleus	28.0	27.33
TraesCS7D01G038700.1	Wheat	cytosol	28.46	27.21
HORVU7Hr1G007940.7	Barley	mitochondrion	28.77	25.83
Zm00001d010047_P001	Maize	plastid	28.92	25.1

Protein Annotations

EnsemblPlants:CDY33569	EnsemblPlantsGene:GSBRNA2T00054861001	GO:A0A078H7W0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
ncoils:Coil	PANTHER:PTHR35705	PANTHER:PTHR35705:SF2	ProteinID:CDY33569	ProteinID:CDY33569.1	SEG:seg
SUPFAM:SSF57997	TMHMM:TMhelix	UniParc:UPI0004EE7431	UniProt:A0A078H7W0	MapMan:20.4.2.2	:

Description

BnaC06g29830DBnaC06g29830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H7W0]

Coordinates

chrLK032317:+:210797..213935

Molecular Weight (calculated)

73768.3 Da

IEP (calculated)

4.534

GRAVY (calculated)

-0.558

Length

650 amino acids

Sequence
(BLAST)

001: MEGISQEDVY NHGEEALSSM SEEEQAREGM FKILSKLEID SAYTSEKLLN LHVLLMHLLA WDNDLEGMGT LGSSAASFEK ALTFDLLCGI LESELKGVDE
101: VLDELEAQIV DTSYKLSACK QVEYSVMEGK LAESAESLKQ SRGQVSEITL QLAQLRRTLH YIRNGTSENE ESAEYSGTGQ DLRQKYVLRP SDLRHKNALR
201: MLEKSLSREL ELEKKLMEFQ QNEEQLKLKL HYTEEVSSRM EEASEFIWGR FLEAENSSEV FMGVSKELVG RLQIIQFSQS WSAQREAELK AKLEDITAQL
301: QAKDLEVKKL EGTIQENQEI VSEVLTLREH VKLTEQKLKD TEVELRSVNA SKQEVLVHLA EMENANESVK ESLFEADSRA ESGETKIKEL NAANLELTEE
401: LSFLKDADDK KTKKVSSLEK QLRELEFQLQ NSKVLSEASQ EQQNMLYSAI WDMETLIEDL KSKASKAESR SETVEEQCIV LSTTNSVLNK EVISLRQRAK
501: SLEASLDLAK EEKEKYAQEI ATRNKLLMDM VMQLSSERER IKEQLYSLAK ENEKLRVNQC SEGGKYQRNG TYAGDKELPS NTDGGGIEAF AESLQAEPET
601: KVEPEFLSES EKSSMNTEIR RASNLRCIPV FAAAFMLFLS FFVLAFVKGK

Best Arabidopsis Sequence Match ( AT1G68910.1 )
(BLAST)

001: MEEIIREDYF EALSSRNEEE QEMLRMLTKL EIDSAYTSEK LMNLHVLLMH LLAWDNDLEG MGTLDSSPAS FEKALTFDLL CGILESEVKE VDEVLDVLEA
101: QIVDTSYKIS SCKHGNYIVI EGKLGESAES LKQSRGQVSE ITLQLAQLRR TLHYIRNGTS ENEESVELRQ KYALKPSDLR HKNALRMLEK SLSRELELEK
201: KLMEFQQNEE QLKLKLHYTE EVSSRMEEAS EFIWGRFLEA DNSSEVLTGI SKELVGRLQI LQFSLNGSAQ RESELKSKLE DCTVQLEAKD LLVQKLEGTI
301: SENSEIVSEV LTLREYVKSA EQKLKNTDLE LKSVNASKQE ILVHLAEMEN ANESVKENLF EAESRAESGE AKIKELDAAN LELTEELNFL KDADDKKTKK
401: VNSLEKQVRE LEVQVQNSKV SSEANQEQQN MLYSAIWDME TLIEDLKSKA SKAESRTETV EEQCIVLSTT NSELNKDVSF LRQKAKSLEA MLDLANNEKE
501: RYAQEITTRN KVLMDMMLQL SSERERIQEQ LYSLAKENKI LRVNQCSNTY QRNGSYAGDK ELSFHADGHE IEALAESLQE DERTREEPEK QSVSEKSSEI
601: RRAIKLKHIL VVALVFVLFC SFFGVTY

Arabidopsis Description

WIT2WPP domain-interacting tail-anchored protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A8MQR0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.