Factsheet for Solyc05g010590.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, golgi, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	golgi
YLoc:	cytosol

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400050565	Potato	cytosol, golgi, nucleus	89.17	89.17
KRH75191	Soybean	cytosol	40.31	41.56
VIT_01s0010g00750.t01	Wine grape	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	43.3	41.36
KRH71037	Soybean	cytosol	40.74	40.4
CDX95976	Canola	cytosol, peroxisome, plastid	21.23	39.84
AT1G68910.1	Thale cress	cytosol	35.33	39.55
CDY45838	Canola	cytosol, golgi, nucleus	35.19	38.35
CDY33569	Canola	cytosol, golgi, peroxisome	35.33	38.15
GSMUA_Achr1P19080_001	Banana	nucleus	32.48	37.87
CDX81573	Canola	cytosol	34.33	37.77
Bra004347.1-P	Field mustard	cytosol	35.19	36.81
Solyc02g065660.2.1	Tomato	nucleus, plastid	31.34	35.14
GSMUA_Achr7P06030_001	Banana	cytosol, golgi, nucleus	32.62	34.49
Bra038339.1-P	Field mustard	nucleus	34.05	33.52
Os05t0241000-01	Rice	nucleus	30.77	32.29
KXG21620	Sorghum	cytosol	28.35	30.76
TraesCSU01G064900.1	Wheat	cytosol	29.77	30.65
TraesCS7A01G042800.1	Wheat	cytosol	29.49	30.44
TraesCS7D01G038700.1	Wheat	cytosol	29.34	30.29
OQU86053	Sorghum	cytosol, golgi, nucleus	27.64	29.13
HORVU3Hr1G057330.1	Barley	cytosol	27.07	28.57
Zm00001d039272_P003	Maize	cytosol	26.5	28.48
TraesCS3A01G158400.1	Wheat	cytosol	26.78	27.93
HORVU7Hr1G007940.7	Barley	mitochondrion	28.63	27.76
TraesCS3D01G166100.1	Wheat	cytosol	25.78	27.68
CDX95975	Canola	cytosol	7.26	27.27
Zm00001d010047_P001	Maize	plastid	28.92	27.1
Os01t0235350-00	Rice	cytosol	26.92	27.0

Protein Annotations

EnsemblPlants:Solyc05g010590.2.1	EnsemblPlantsGene:Solyc05g010590.2	GO:GO:0005575	GO:GO:0008150	GO:GO:0009653	GO:GO:0009987
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:2000769	ncoils:Coil	PANTHER:PTHR35705
PANTHER:PTHR35705:SF2	SEG:seg	SUPFAM:SSF57997	TMHMM:TMhelix	UniParc:UPI0002767028	UniProt:K4BXN1
MapMan:20.4.2.2	:	:	:	:	:

Description

WPP domain-interacting tail-anchored protein 2 [Source:Projected from Arabidopsis thaliana (AT1G68910) UniProtKB/Swiss-Prot;Acc:A8MQR0]

Coordinates

chr5:-:4826860..4832345

Molecular Weight (calculated)

80688.4 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.479

Length

702 amino acids

Sequence
(BLAST)

001: MAIEELAVRT SDIVNPQVME TLLIENHSSE AKDMEEMRSS MEILSRVDLD LAYSDEKLTN LDNLLMRVLA CENEVEAISF ENDEISPESI EKVLSLDHLS
101: IILNSEIRQL DNFLGTLQDL VIEARQKIPT RREFSELHVI MENKFHDTEE LLRISKERVL EMKMQLAKLQ MTSLAFDQNE WRHRMSLDLS DINNVSAREL
201: KPHAQTVEQR RILRMLEKSL ERELDLEKKL TLHKQNEDDL KLKLRLTEQV ALCMEEGAEV IWGRFLESEN AAEVLMGISR EMVSRLQVVN FNLNGSLQRE
301: KDFTLKIDNC IGQINAKDIT IQNLNSNNKH LAVENTEVSS LRDKLKLSED KLKESESKLL KANELNEVSE ERLKELECIV ESQKEDIDIA EHKADNAEEK
401: VAHLTETNLE LHEELDFLKS SNESNAKKVS ILEKKVRELE LQLQNAKTSS EAGQEQQNML YTAIWDMETL IDELKQKVLK AESKTEHVEE QCLILSETNL
501: ELTQEVEFLR SRVEGLETSL NQATVEKLAS AKDINIKTSF IMDLVMQLAI ERERVQKQIF CLAKENKSLI SKLKSTKEQP SINVLENGGD DIGLSSSRFA
601: STIAAATDSY RELQTESSQR SSQVINELPH DKPTDRSSKS SILTNEEPNI VVKSEDTEAQ FLAKQHQHRY IVMAILVLLL STLGLYFFDK RNDILEWLMV
701: RL

Best Arabidopsis Sequence Match ( AT1G68910.2 )
(BLAST)

001: MEEIIREDYF EALSSRNEEE QEMLRMLTKL EIDSAYTSEK LMNLHVLLMH LLAWDNDLEG MGTLDSSPAS FEKALTFDLL CGILESEVKE VDEVLDVLEA
101: QIVDTSYKIS SCKHGNYIVI EGKLGESAES LKQSRGQVSE ITLQLAQLRR TLHYIRNGTS ENEESVELRQ KYALKPSDLR HKNALRMLEK SLSRELELEK
201: KLMEFQQNEE QLKLKLHYTE EVSSRMEEAS EFIWGRFLEA DNSSEVLTGI SKELVGRLQI LQFSLNGSAQ RESELKSKLE DCTVQLEAKD LLVQKLEGTI
301: SENSEIVSEV LTLREYVKSA EQKLKNTDLE LKSVNASKQE ILVHLAEMEN ANESVKENLF EAESRAESGE AKIKELDAAN LELTEELNFL KDADDKKTKK
401: VNSLEKQVRE LEVQVQNSKV SSEANQEQQN MLYSAIWDME TLIEDLKSKA SKAESRTETV EEQCIVLSTT NSELNKDVSF LRQKAKSLEA MLDLANNEKE
501: RYAQEITTRN KVLMDMMLQL SSERERIQEQ LYSLAKENKI LRVNQCSNTY QRNGSYAGDK ELSFHADGHE IEALAESLQA GG

Arabidopsis Description

WIT2WPP domain-interacting tail-anchored protein 2 [Source:UniProtKB/Swiss-Prot;Acc:A8MQR0]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.