Factsheet for TraesCS3A01G400100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 1
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G331000.1
TraesCS2B01G351300.1
TraesCS2D01G332000.1
TraesCS3A01G158400.1
TraesCS3D01G166100.1
TraesCS5A01G257000.1
TraesCS5B01G256500.1
TraesCS5D01G265600.1
TraesCS6A01G272000.1
TraesCS6B01G299600.1
TraesCS6D01G252200.1
TraesCS7A01G042800.1
TraesCS7A01G240200.1
TraesCS7B01G135800.1
TraesCS7D01G038700.1
TraesCS7D01G238200.1
TraesCSU01G064900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	TraesCS6A01G272000.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS6B01G299600.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS6D01G252200.1	AT3G50910.1	21798944
AT3G63130.1	TraesCS2A01G331000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2B01G351300.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2D01G332000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5A01G257000.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5B01G256500.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS5D01G265600.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7A01G240200.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7B01G135800.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS7D01G238200.1	AT4G26455.1	17600715
AT3G63130.1	TraesCS2A01G331000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS2B01G351300.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS2D01G332000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5A01G257000.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5B01G256500.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS5D01G265600.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7A01G240200.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7B01G135800.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS7D01G238200.1	AT4G26455.1	20579133
AT3G63130.1	TraesCS3A01G158400.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS3D01G166100.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS7A01G042800.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS7D01G038700.1	AT5G11390.1	18591351
AT3G63130.1	TraesCSU01G064900.1	AT5G11390.1	18591351
AT3G63130.1	TraesCS2A01G331000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2B01G351300.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2D01G332000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5A01G257000.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5B01G256500.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS5D01G265600.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7A01G240200.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7B01G135800.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS7D01G238200.1	AT5G56210.1	17600715
AT3G63130.1	TraesCS2A01G331000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS2B01G351300.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS2D01G332000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5A01G257000.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5B01G256500.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS5D01G265600.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7A01G240200.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7B01G135800.1	AT5G56210.1	20579133
AT3G63130.1	TraesCS7D01G238200.1	AT5G56210.1	20579133
AT5G19320.1	TraesCS2A01G331000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS2B01G351300.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS2D01G332000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5A01G257000.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5B01G256500.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS5D01G265600.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7A01G240200.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7B01G135800.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS7D01G238200.1	AT4G26455.1	17600715
AT5G19320.1	TraesCS3A01G158400.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS3D01G166100.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS7A01G042800.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS7D01G038700.1	AT5G11390.1	18591351
AT5G19320.1	TraesCSU01G064900.1	AT5G11390.1	18591351
AT5G19320.1	TraesCS2A01G331000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS2B01G351300.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS2D01G332000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5A01G257000.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5B01G256500.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS5D01G265600.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7A01G240200.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7B01G135800.1	AT5G56210.1	17600715
AT5G19320.1	TraesCS7D01G238200.1	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G394300.1	Wheat	cytosol, plastid	91.51	97.29
TraesCS3B01G433100.1	Wheat	cytosol, plastid	91.34	97.11
HORVU3Hr1G090080.1	Barley	plastid	88.96	94.58
TraesCS1A01G256200.1	Wheat	cytosol	82.34	88.18
Os05t0543200-01	Rice	plasma membrane	76.74	83.09
EES05430	Sorghum	cytosol, nucleus, plastid	75.72	82.14
Zm00001d051112_P001	Maize	plasma membrane	71.14	81.2
EES05435	Sorghum	cytosol, plastid	75.21	79.39
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	69.78	78.59
EES07543	Sorghum	cytosol	32.26	75.7
GSMUA_Achr11P...	Banana	cytosol, plastid	61.97	66.61
VIT_07s0104g00520.t01	Wine grape	plastid	60.61	65.99
KRH32020	Soybean	cytosol	58.57	64.61
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	58.74	64.19
KRH71426	Soybean	nucleus	58.06	64.17
Zm00001d052426_P001	Maize	cytosol	14.6	62.77
PGSC0003DMT400086322	Potato	cytosol	56.88	62.73
Solyc09g065190.1.1	Tomato	plastid	56.88	62.73
KRG91256	Soybean	endoplasmic reticulum	56.37	62.41
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	55.69	62.36
KRH35557	Soybean	endoplasmic reticulum, nucleus	56.03	61.91
AT5G19320.1	Thale cress	cytosol	57.05	61.65
PGSC0003DMT400023310	Potato	plastid	56.54	60.22
Solyc01g079680.2.1	Tomato	plastid	56.2	60.18
Zm00001d034691_P001	Maize	cytosol	38.71	60.0
AT3G63130.1	Thale cress	plastid	54.33	59.81
CDY56462	Canola	cytosol, plastid	54.33	59.81
Bra007730.1-P	Field mustard	cytosol, plastid	54.33	59.81
CDX92540	Canola	cytosol	56.71	59.64
CDX93931	Canola	cytosol	33.28	57.99
Bra040432.1-P	Field mustard	plastid	52.12	57.28
CDX89174	Canola	plastid	52.12	56.96
Os05t0409200-00	Rice	cytosol	10.19	56.07
CDY16082	Canola	cytosol	10.7	55.75
CDX76683	Canola	mitochondrion	54.16	54.07
CDY02566	Canola	cytosol	18.17	54.04
CDX93932	Canola	cytosol	10.36	53.04
Bra026911.1-P	Field mustard	cytosol	11.54	51.52
Bra013834.1-P	Field mustard	cytosol	10.87	48.48
GSMUA_Achr8P13660_001	Banana	cytosol	49.07	47.22
Bra020034.1-P	Field mustard	cytosol	19.19	45.94
CDY44911	Canola	cytosol	19.02	44.62
AT3G06000.1	Thale cress	cytosol	13.41	37.44
Zm00001d043604_P002	Maize	cytosol	33.79	37.06
Zm00001d046105_P001	Maize	peroxisome	34.8	34.86
CDY27720	Canola	cytosol, mitochondrion	14.26	34.57
Bra020788.1-P	Field mustard	cytosol, mitochondrion	13.75	34.32
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	10.19	31.41
TraesCS7A01G194400.1	Wheat	plastid	14.94	14.31

Protein Annotations

EnsemblPlants:TraesCS3A01G400100.1	EnsemblPlantsGene:TraesCS3A01G400100	Gene3D:1.10.246.200	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt
InterPro:WPP_dom	InterPro:WPP_sf	ncoils:Coil	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	PFAM:PF13516
PFAM:PF13943	SEG:seg	SMART:SM00368	SUPFAM:SSF52047	MapMan:23.5.1.5	:

Description

No Description!

Coordinates

chr3A:-:646848389..646850299

Molecular Weight (calculated)

61514.6 Da

IEP (calculated)

4.235

GRAVY (calculated)

-0.305

Length

589 amino acids

Sequence
(BLAST)

001: MASAAPDFQP RTFSIKLWPP SESTRLMLVE RMTKNLSSES IFSRKYGLLG KEEAHANAKR IEEMCFASAD EHFKKEPDGD GSSAVQLYAK ETSKLMLEVL
101: KKGPGTTAEP EAPVIDTPIE PADTVFDISG GKRAFIEADE AKELLSPLTE PGNSYSRICL SNRSFGIGAA NVAGPILESI KSQLKEVDIS DFVAGRPEDE
201: ALDVMRIFSK ALAGSVLRYL NISDNALGEK GVRAFTELLK SQGDLEELYV MNDGISGEAA KALSELIPST EKLKVLHFHN NMTGDEGAMF IAEMVKRSPN
301: LESFRCSATR IGSDGGVALA EALGTCTRLK KLDIRDNLFG VEAGVALSET LPKLGDLVEL YLSDLNLENE GTIAIVNVLK ESAPQLEILE MAGNEITAEA
401: AKPLAECLTA MQSLKKLTLA ENELKDAGAV AVAKSLQEGH PDLKELDVST NLFQRSGARC FAQAVANKPG FVLLNMNANY IPEEGIDEVR KILKAGENLA
501: DVLGPLDENE PEGNPDDEDE EEDDDDEAKY GDDNGKDAGL GSKLQDLKVE AEEXXXXXXX XXXXXXXXXX XXXSFGNTSL DQLELNFAE

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.