CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra020788.1-P	Field mustard	cytosol, mitochondrion	80.66	83.05
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	53.5	68.06
AT3G06000.1	Thale cress	cytosol	48.15	55.45
CDY02566	Canola	cytosol	28.4	34.85
Os05t0409200-00	Rice	cytosol	15.23	34.58
CDY16082	Canola	cytosol	11.52	24.78
CDX93931	Canola	cytosol	31.69	22.78
EES07543	Sorghum	cytosol	23.46	22.71
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	36.63	17.02
CDX92540	Canola	cytosol	38.27	16.61
KRG91256	Soybean	endoplasmic reticulum	36.21	16.54
Solyc01g079680.2.1	Tomato	plastid	36.63	16.18
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	34.98	16.16
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	35.8	16.14
KRH35557	Soybean	endoplasmic reticulum, nucleus	35.39	16.14
PGSC0003DMT400023310	Potato	plastid	36.63	16.09
TraesCS1A01G256200.1	Wheat	cytosol	36.21	16.0
TraesCS1D01G255600.1	Wheat	cytosol, plastid	35.8	15.68
EES05430	Sorghum	cytosol, nucleus, plastid	34.98	15.65
TraesCS1B01G266900.1	Wheat	plastid	35.39	15.61
EES05435	Sorghum	cytosol, plastid	35.8	15.59
Zm00001d051112_P001	Maize	plasma membrane	32.92	15.5
Os05t0543200-01	Rice	plasma membrane	34.16	15.26
TraesCS3B01G433100.1	Wheat	cytosol, plastid	34.57	15.16
TraesCS3D01G394300.1	Wheat	cytosol, plastid	34.57	15.16
GSMUA_Achr11P...	Banana	cytosol, plastid	33.74	14.96
HORVU3Hr1G090080.1	Barley	plastid	33.74	14.8
TraesCS3A01G400100.1	Wheat	plastid	34.57	14.26
CDY56462	Canola	cytosol, plastid	31.28	14.21
CDX89174	Canola	plastid	30.86	13.91
CDX76683	Canola	mitochondrion	32.1	13.22
HORVU1Hr1G063300.3	Barley	plastid	34.98	13.02
GSMUA_Achr8P13660_001	Banana	cytosol	30.04	11.93
Zm00001d034691_P001	Maize	cytosol	13.99	8.95
CDY44911	Canola	cytosol	9.05	8.76
CDY55048	Canola	plastid	16.46	6.7
CDX93413	Canola	plastid	16.46	6.7
Zm00001d052426_P001	Maize	cytosol	3.7	6.57
CDY20954	Canola	plastid	16.05	6.48
CDY20626	Canola	plastid	15.64	6.37
Zm00001d043604_P002	Maize	cytosol	13.58	6.15
Zm00001d046105_P001	Maize	peroxisome	12.76	5.27
CDX93932	Canola	cytosol	0.82	1.74

Protein Annotations

EnsemblPlants:CDY27720	EnsemblPlantsGene:GSBRNA2T00038517001	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	ncoils:Coil	PANTHER:PTHR24106
PANTHER:PTHR24106:SF248	PFAM:PF13516	ProteinID:CDY27720	ProteinID:CDY27720.1	SEG:seg	SMART:SM00368
SUPFAM:SSF52047	UniParc:UPI0004EF3709	UniProt:A0A078GMD7	MapMan:35.1	:	:

Description

BnaA05g31290DBnaA05g31290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GMD7]

Coordinates

chrLK032209:-:46826..47557

Molecular Weight (calculated)

27546.5 Da

IEP (calculated)

4.056

GRAVY (calculated)

-0.338

Length

243 amino acids

Sequence
(BLAST)

001: MAKRQALLVN MRNKIKELEV KMAETSLTNE DAMEEKQLCD SITKVRVPMS KAFSNFNFVT IINLSYTNLE NEGTIALVNA LENSAPSLKA IEMAGNNITY
101: EAAPDISACL AAKKHLKRLN LSNNDLKDEG CFEIAYIMEP LEVKYVDMSS NNLTREGALS LALVAVKKEG FEMLNIDGNM ISFEGIEEIM EIFKNCPKLL
201: GPFDDNDPYE GDEDYGYDDD QEWESESLHE DFEDEFVSVF YFY

Best Arabidopsis Sequence Match ( AT3G06000.1 )
(BLAST)

001: MVDTSLTNED TIEETAFETC THIKVGVSMS KPFSSFSFLT VINLSYTNLE NGGAIALVNA LKNSAPSLQV IEMAGNNITY EAATAIAVCL AAKRHLKKLN
101: LSENDLKDEG CVEIVKSMED WELEYVDMSY NDLRREGALR LARVVVKKGS FKMLNIDGNM ISLKGIEEIK VIFTNCPKLL GPLDKNVYNV DDDDDLREND
201: EDEFVSVFIF Y

Arabidopsis Description

F2O10.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SFG4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.