CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER96942
EES14314
KXG21620
OQU78405
OQU81760
OQU85551
OQU86053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	OQU78405	AT3G50910.1	21798944
AT3G63130.1	OQU85551	AT3G50910.1	21798944
AT3G63130.1	EER96942	AT4G26455.1	17600715
AT3G63130.1	EES14314	AT4G26455.1	17600715
AT3G63130.1	OQU81760	AT4G26455.1	17600715
AT3G63130.1	EER96942	AT4G26455.1	20579133
AT3G63130.1	EES14314	AT4G26455.1	20579133
AT3G63130.1	OQU81760	AT4G26455.1	20579133
AT3G63130.1	KXG21620	AT5G11390.1	18591351
AT3G63130.1	OQU86053	AT5G11390.1	18591351
AT3G63130.1	EER96942	AT5G56210.1	17600715
AT3G63130.1	EES14314	AT5G56210.1	17600715
AT3G63130.1	OQU81760	AT5G56210.1	17600715
AT3G63130.1	EER96942	AT5G56210.1	20579133
AT3G63130.1	EES14314	AT5G56210.1	20579133
AT3G63130.1	OQU81760	AT5G56210.1	20579133
AT5G19320.1	EER96942	AT4G26455.1	17600715
AT5G19320.1	EES14314	AT4G26455.1	17600715
AT5G19320.1	OQU81760	AT4G26455.1	17600715
AT5G19320.1	KXG21620	AT5G11390.1	18591351
AT5G19320.1	OQU86053	AT5G11390.1	18591351
AT5G19320.1	EER96942	AT5G56210.1	17600715
AT5G19320.1	EES14314	AT5G56210.1	17600715
AT5G19320.1	OQU81760	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0409200-00	Rice	cytosol	18.33	42.99
Zm00001d051112_P001	Maize	plasma membrane	86.06	41.86
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	84.86	40.73
CDX93931	Canola	cytosol	54.58	40.53
CDY16082	Canola	cytosol	17.93	39.82
EES05430	Sorghum	cytosol, nucleus, plastid	85.66	39.59
EES05435	Sorghum	cytosol, plastid	86.45	38.89
Bra026911.1-P	Field mustard	cytosol	19.92	37.88
Os05t0543200-01	Rice	plasma membrane	80.48	37.13
Bra013834.1-P	Field mustard	cytosol	19.52	37.12
TraesCS1A01G256200.1	Wheat	cytosol	77.69	35.45
TraesCS1B01G266900.1	Wheat	plastid	76.89	35.03
TraesCS3D01G394300.1	Wheat	cytosol, plastid	76.89	34.84
TraesCS3B01G433100.1	Wheat	cytosol, plastid	76.49	34.66
HORVU3Hr1G090080.1	Barley	plastid	76.49	34.66
TraesCS1D01G255600.1	Wheat	cytosol, plastid	76.49	34.59
TraesCS3A01G400100.1	Wheat	plastid	75.7	32.26
AT3G06000.1	Thale cress	cytosol	25.5	30.33
HORVU1Hr1G063300.3	Barley	plastid	76.49	29.4
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	62.55	29.13
Solyc09g065190.1.1	Tomato	plastid	61.75	29.03
GSMUA_Achr11P...	Banana	cytosol, plastid	63.35	29.01
PGSC0003DMT400086322	Potato	cytosol	61.35	28.84
Zm00001d034691_P001	Maize	cytosol	43.43	28.68
VIT_07s0104g00520.t01	Wine grape	plastid	61.75	28.65
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	59.76	28.52
KRG91256	Soybean	endoplasmic reticulum	60.16	28.38
KRH32020	Soybean	cytosol	60.16	28.28
KRH35557	Soybean	endoplasmic reticulum, nucleus	59.76	28.14
KRH71426	Soybean	nucleus	59.76	28.14
CDY56462	Canola	cytosol, plastid	57.37	26.92
Bra007730.1-P	Field mustard	cytosol, plastid	56.97	26.73
AT3G63130.1	Thale cress	plastid	56.18	26.36
Bra040432.1-P	Field mustard	plastid	56.18	26.31
CDX89174	Canola	plastid	56.18	26.16
AT5G19320.1	Thale cress	cytosol	56.18	25.87
Solyc01g079680.2.1	Tomato	plastid	56.18	25.64
PGSC0003DMT400023310	Potato	plastid	56.18	25.5
CDX92540	Canola	cytosol	56.18	25.18
CDX76683	Canola	mitochondrion	56.57	24.07
CDY27720	Canola	cytosol, mitochondrion	22.71	23.46
Bra020788.1-P	Field mustard	cytosol, mitochondrion	20.72	22.03
CDY02566	Canola	cytosol	17.13	21.72
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	13.55	17.8
GSMUA_Achr8P13660_001	Banana	cytosol	41.43	16.99
CDY44911	Canola	cytosol	14.34	14.34
Bra020034.1-P	Field mustard	cytosol	13.94	14.23
KXG19681	Sorghum	plastid	19.12	7.29
CDX93932	Canola	cytosol	0.4	0.87

Protein Annotations

EnsemblPlants:EES07543	EnsemblPlantsGene:SORBI_3004G302300	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001611	InterPro:IPR032675	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PANTHER:PTHR24106	PANTHER:PTHR24106:SF248
PFAM:PF13516	ProteinID:EES07543	ProteinID:EES07543.1	RefSeq:XP_002454567.1	SMART:SM00368	SUPFAM:SSF52047
UniParc:UPI0001A860B0	UniProt:C5XS52	MapMan:23.5.1.5	:	:	:

Description

hypothetical protein

Coordinates

chr4:-:64090978..64091773

Molecular Weight (calculated)

27072.4 Da

IEP (calculated)

4.488

GRAVY (calculated)

-0.174

Length

251 amino acids

Sequence
(BLAST)

001: MNDGISEEAA KALSELIPAT EKLKVLHFHN NMTGDEGAMY IAEMVKRSPN LESFRCSATR IGSDGGVALS EALGTCTCLK KLDLRDNLFG VDAGLALSKT
101: LPKLPDLVEL YLSDLNLEYK SNCQCPQIVS TTVGAPNLAE CLAVMQSLKK LTLAENELKD DGAVIIAKSL EDGHTDLKEL DVSTNMLQRV GARCFARAVA
201: NKPAFVQLNI NGNFISDEGI DEVRKILKAG KSSLDVLGSL DENERDGEPD D

Best Arabidopsis Sequence Match ( AT5G19320.2 )
(BLAST)

001: MADILDSRPH AFSIKLWPPS LPTRKALIER ITNNFSSKTI FTEKYGSLTK DQATENAKRI EDIAFSTANQ QFEREPDGDG GSAVQLYAKE CSKLILEVLK
101: KGPVAKVAAR ELISEDSVSP RETFFDISKG KRAFIEAEEA EELLKPLKEP GNAYTKICFS NRSFGLGAAR VAEPILASLK DQLKEVDLSD FVAGRPELEA
201: LEVMNIFSDA LQGSILSSLN LSDNALGEKG VRAFGALLKS LSSLEELYLM NDGISKEAAQ AVSELIPSTE NLRVLHFHNN MTGDEGALAI AEVVKRSPLL
301: ENFRCSSTRV GSKGGIALSE ALEHCTHMEK LDLRDNMFGT EAGVSLSKTL SSFKHMTELY LSYLNLEDEG AIAIVNALKE SASPIEVLEM AGNDITVEAA
401: SAIAACVAAK QDLNKLNLSE NELKDEGCVQ IANCIEEGHS KLQYIDMSTN YIRRAGARAL AHVVVKKEAF KLLNIDGNII SEEGIEELKE IFKKSPELLG
501: ALDENDPDGE EDDDDEEDEE DEENEGNGNG ELESKLKNLE VNQED

Arabidopsis Description

RANGAP2RANGAP2 [Source:UniProtKB/TrEMBL;Acc:A0A178UQD1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.