CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 6

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56462	Canola	cytosol, plastid	85.59	94.39
CDX93931	Canola	cytosol	50.0	87.28
CDX89174	Canola	plastid	74.92	82.0
CDX93932	Canola	cytosol	13.9	71.3
Os05t0543200-01	Rice	plasma membrane	56.1	60.85
Zm00001d051112_P001	Maize	plasma membrane	52.71	60.27
GSMUA_Achr11P...	Banana	cytosol, plastid	55.59	59.85
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	53.05	59.85
EES05430	Sorghum	cytosol, nucleus, plastid	54.92	59.67
CDY02566	Canola	cytosol	19.83	59.09
TraesCS1B01G266900.1	Wheat	plastid	55.08	58.98
TraesCS1D01G255600.1	Wheat	cytosol, plastid	55.25	58.74
TraesCS1A01G256200.1	Wheat	cytosol	54.75	58.73
CDX92540	Canola	cytosol	55.42	58.39
TraesCS3B01G433100.1	Wheat	cytosol, plastid	54.07	57.58
TraesCS3D01G394300.1	Wheat	cytosol, plastid	53.9	57.4
EES05435	Sorghum	cytosol, plastid	54.24	57.35
HORVU3Hr1G090080.1	Barley	plastid	53.56	57.04
EES07543	Sorghum	cytosol	24.07	56.57
CDY16082	Canola	cytosol	10.68	55.75
TraesCS3A01G400100.1	Wheat	plastid	54.07	54.16
Zm00001d052426_P001	Maize	cytosol	12.2	52.55
HORVU1Hr1G063300.3	Barley	plastid	54.58	49.31
Zm00001d034691_P001	Maize	cytosol	29.66	46.05
GSMUA_Achr8P13660_001	Banana	cytosol	43.56	41.99
CDY44911	Canola	cytosol	17.12	40.24
Os05t0409200-00	Rice	cytosol	6.95	38.32
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	10.51	32.46
CDY27720	Canola	cytosol, mitochondrion	13.22	32.1
Zm00001d043604_P002	Maize	cytosol	26.78	29.42
Zm00001d046105_P001	Maize	peroxisome	27.12	27.21
CDY20626	Canola	plastid	16.61	16.42
CDX93413	Canola	plastid	16.61	16.42
CDY55048	Canola	plastid	16.44	16.25
CDY20954	Canola	plastid	16.44	16.11

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	EnsemblPlants:CDX76683	ProteinID:CDX76683	ProteinID:CDX76683.1
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00127159001	InterPro:IPR001611
InterPro:IPR032675	InterPro:IPR038214	InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	PFAM:PF13516	PFAM:PF13943
PANTHER:PTHR24106	PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI0004EDDCE7	InterPro:WPP_dom
InterPro:WPP_sf	SEG:seg	:	:	:	:

Description

BnaC08g32690D

Coordinates

chrLK031808:+:510460..512706

Molecular Weight (calculated)

65079.2 Da

IEP (calculated)

4.535

GRAVY (calculated)

-0.415

Length

590 amino acids

Sequence
(BLAST)

001: MIKKKWSKRQ KVWWTVHRRF QNATLPPLKP PLLLSSPNRR KLERSISIPL RNEEAMDHSV KTPPVLSVKM WPPSKSTRLM LVDRMTKNIT TPSIFSRKYG
101: LLSLQEAEED AKRIEELAFA TANKHFQSEP DADGTSAVHV YAKESSKLML EVIKRGPQQV DSEAEANNDG DALFDLSGGR RAFIDLEEAR ELLRPLAEPN
201: NSYTKIRFSN RSFGSEAAKF AVGVLSSVKD QLTEVDLSDF VAGRPEAEAL EVMTMFSSAL EGSNLRSLNL SDNALGEKGI RAFASLIKSQ RGLEELYLMN
301: DGISEDAARA VRELLPSTGE IRVLQFHNNM TGDEGAIAIA EIVKQCPSLE DFRCSSTRIG SDGGVALAEA LASCSRLKKL DLRDNMFGVE GGVALANTLS
401: VLNELTEIYM SYLNLEDEGT EALAEALIKS APRLEVIELA GNDITVKSTG KLAACIALKE SLSKLNLSEN ELKDEGTIII AKALEEGHDQ LAEVDMSTNM
501: MRRAGARALA QTVLKKPTLK LLNINGNFIS EEGVDEVNDM FKDSADKLGP LDDNDPEGED FEDEDEEEEG EEDNELEAKL GGLKIKQEEE

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.