Factsheet for GSMUA_Achr11P01660_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr1P12060_001
GSMUA_Achr1P19080_001
GSMUA_Achr2P22980_001
GSMUA_Achr3P04120_001
GSMUA_Achr4P01630_001
GSMUA_Achr6P08980_001
GSMUA_Achr7P06030_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G63130.1	GSMUA_Achr1P12060_001	AT3G50910.1	21798944
AT3G63130.1	GSMUA_Achr2P22980_001	AT3G50910.1	21798944
AT3G63130.1	GSMUA_Achr6P08980_001	AT3G50910.1	21798944
AT3G63130.1	GSMUA_Achr10P...	AT4G26455.1	17600715
AT3G63130.1	GSMUA_Achr3P04120_001	AT4G26455.1	17600715
AT3G63130.1	GSMUA_Achr4P01630_001	AT4G26455.1	17600715
AT3G63130.1	GSMUA_Achr10P...	AT4G26455.1	20579133
AT3G63130.1	GSMUA_Achr3P04120_001	AT4G26455.1	20579133
AT3G63130.1	GSMUA_Achr4P01630_001	AT4G26455.1	20579133
AT3G63130.1	GSMUA_Achr1P19080_001	AT5G11390.1	18591351
AT3G63130.1	GSMUA_Achr7P06030_001	AT5G11390.1	18591351
AT3G63130.1	GSMUA_Achr10P...	AT5G56210.1	17600715
AT3G63130.1	GSMUA_Achr3P04120_001	AT5G56210.1	17600715
AT3G63130.1	GSMUA_Achr4P01630_001	AT5G56210.1	17600715
AT3G63130.1	GSMUA_Achr10P...	AT5G56210.1	20579133
AT3G63130.1	GSMUA_Achr3P04120_001	AT5G56210.1	20579133
AT3G63130.1	GSMUA_Achr4P01630_001	AT5G56210.1	20579133
AT5G19320.1	GSMUA_Achr10P...	AT4G26455.1	17600715
AT5G19320.1	GSMUA_Achr3P04120_001	AT4G26455.1	17600715
AT5G19320.1	GSMUA_Achr4P01630_001	AT4G26455.1	17600715
AT5G19320.1	GSMUA_Achr1P19080_001	AT5G11390.1	18591351
AT5G19320.1	GSMUA_Achr7P06030_001	AT5G11390.1	18591351
AT5G19320.1	GSMUA_Achr10P...	AT5G56210.1	17600715
AT5G19320.1	GSMUA_Achr3P04120_001	AT5G56210.1	17600715
AT5G19320.1	GSMUA_Achr4P01630_001	AT5G56210.1	17600715

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_07s0104g00520.t01	Wine grape	plastid	68.61	69.5
EES05430	Sorghum	cytosol, nucleus, plastid	68.43	69.06
Os05t0543200-01	Rice	plasma membrane	68.43	68.93
TraesCS1A01G256200.1	Wheat	cytosol	68.25	68.0
Zm00001d051112_P001	Maize	plasma membrane	63.5	67.44
PGSC0003DMT400086322	Potato	cytosol	65.69	67.42
EES05435	Sorghum	cytosol, plastid	68.61	67.38
TraesCS1B01G266900.1	Wheat	plastid	67.7	67.33
Solyc09g065190.1.1	Tomato	plastid	65.51	67.23
Zm00001d017239_P001	Maize	mitochondrion, plasma membrane	63.69	66.73
TraesCS3D01G394300.1	Wheat	cytosol, plastid	67.15	66.43
VIT_05s0020g02970.t01	Wine grape	cytosol, plastid	65.33	66.42
TraesCS1D01G255600.1	Wheat	cytosol, plastid	66.97	66.13
TraesCS3B01G433100.1	Wheat	cytosol, plastid	66.61	65.88
KRH32020	Soybean	cytosol	63.5	65.17
HORVU3Hr1G090080.1	Barley	plastid	65.88	65.16
KRH71426	Soybean	nucleus	63.32	65.1
KRG91256	Soybean	endoplasmic reticulum	62.23	64.1
VIT_19s0014g03800.t01	Wine grape	cytosol, plastid	61.31	63.88
KRH35557	Soybean	endoplasmic reticulum, nucleus	62.04	63.79
EES07543	Sorghum	cytosol	29.01	63.35
AT5G19320.1	Thale cress	cytosol	61.86	62.2
CDY56462	Canola	cytosol, plastid	60.58	62.06
Bra007730.1-P	Field mustard	cytosol, plastid	60.58	62.06
Solyc01g079680.2.1	Tomato	plastid	62.23	62.0
TraesCS3A01G400100.1	Wheat	plastid	66.61	61.97
AT3G63130.1	Thale cress	plastid	60.22	61.68
PGSC0003DMT400023310	Potato	plastid	62.23	61.66
CDX92540	Canola	cytosol	62.04	60.71
CDX93931	Canola	cytosol	36.86	59.76
Bra040432.1-P	Field mustard	plastid	58.39	59.7
CDX89174	Canola	plastid	58.39	59.37
GSMUA_Achr8P13660_001	Banana	cytosol	64.78	58.01
HORVU1Hr1G063300.3	Barley	plastid	67.34	56.51
Zm00001d052426_P001	Maize	cytosol	14.05	56.2
CDY16082	Canola	cytosol	11.5	55.75
CDX76683	Canola	mitochondrion	59.85	55.59
CDX93932	Canola	cytosol	11.31	53.91
Bra013834.1-P	Field mustard	cytosol	12.96	53.79
CDY02566	Canola	cytosol	19.34	53.54
Bra026911.1-P	Field mustard	cytosol	12.41	51.52
Zm00001d034691_P001	Maize	cytosol	33.58	48.42
Os05t0409200-00	Rice	cytosol	8.94	45.79
Bra020034.1-P	Field mustard	cytosol	20.07	44.72
CDY44911	Canola	cytosol	19.89	43.43
AT3G06000.1	Thale cress	cytosol	15.69	40.76
Bra020788.1-P	Field mustard	cytosol, mitochondrion	14.96	34.75
CDY27720	Canola	cytosol, mitochondrion	14.96	33.74
Zm00001d043604_P002	Maize	cytosol	33.03	33.71
CDY05221	Canola	cytosol, mitochondrion, nucleus, plastid	11.31	32.46
Zm00001d046105_P001	Maize	peroxisome	33.03	30.78
GSMUA_Achr9P28160_001	Banana	plastid	17.88	15.88

Protein Annotations

Gene3D:1.10.246.200	MapMan:23.5.1.5	Gene3D:3.80.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
EnsemblPlantsGene:GSMUA_Achr11G01660_001	EnsemblPlants:GSMUA_Achr11P01660_001	EnsemblPlants:GSMUA_Achr11T01660_001	InterPro:IPR001611	InterPro:IPR032675	InterPro:IPR038214
InterPro:LRR_dom_sf	InterPro:Leu-rich_rpt	UniProt:M0RNJ6	PFAM:PF13516	PFAM:PF13943	PANTHER:PTHR24106
PANTHER:PTHR24106:SF248	SMART:SM00368	SUPFAM:SSF52047	UniParc:UPI000296DC9D	InterPro:WPP_dom	InterPro:WPP_sf
SEG:seg	:	:	:	:	:

Description

RAN GTPase-activating protein 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G01660_001]

Coordinates

chr11:-:1124697..1128296

Molecular Weight (calculated)

59637.8 Da

IEP (calculated)

4.492

GRAVY (calculated)

-0.236

Length

548 amino acids

Sequence
(BLAST)

001: MDAAATQDFH PRTFSIKLWP PSASTRTMLV EKMTKNLSSE SIFSRKYGLL SKEEAYENAK RIEDECFIAA SEHFQKEPDG DGSSAVQFYA RETSKLMLEV
101: LKRGPERKEH GEVVAVDRPV KPIETVFDIS GGRRAFIDAD EARELLSPLT EQGNSYKKIC LSNISFGIDA AHVAGPILAS LKGQLTEVNL SDFIAGRPED
201: EALEVMKIFS SALEGCVLRY LNLSDNALGE KGVRAFGALL KSQNSLEELS LMNDGISEAA AKAVCELIPS TDKLKILHFH NNMTGDEGAI AISEVLKHSP
301: LLEDFRCSST RVASEGGIEL AKALETCTHL KKLDIRDNIF GVDAGITLSK TLEKLVHITE IYISYLNLED EGAIAIANAL KQSVPFLEVM DIAGNEITTK
401: AAPALAECIA VKKSLRTLIL SENELKDQGA VLIGRALEEG HTQLKELDVS INMLRRVGAR CLAQAVSNKP DFKLLNINGN AISDEGIDEV KEILTNGSNS
501: VDVLGPLDEN DVEEEGEDGE EEEGEGGAAA EGEGELESKL HHLKVEQD

Best Arabidopsis Sequence Match ( AT3G63130.2 )
(BLAST)

001: MDHSAKTTQN RVLSVKMWPP SKSTRLMLVE RMTKNITTPS IFSRKYGLLS VEEAEQDAKR IEDLAFATAN KHFQNEPDGD GTSAVHVYAK ESSKLMLDVI
101: KRGPQEESEV EVSKDGDVFF DISGGSRAFI EEEEARDLLR PLADPRNSYT KIRFSNRSFG SEAAKFAASV LSSIKDQLTE VDLSDFVAGR PEAEALEVMN
201: MFSSALEGSK LRYLNLSDNA LGEKGIRAFA SLINSQHDLE ELYLMNDGIS EDAARAVREL LPSTDKIRVL QFHNNMTGDE GATAIAEIVR ECPSLEDFRC
301: SSTRIGSEGG VALAEALEHC SHLKKLDLRD NMFGVEGGIA LAKTLSVLTH LTEIYMSYLN LEDEGTEALS EALLKSAPSL EVLELAGNDI TVKSTGNLAA
401: CIASKQSLAK LNLSENELKD EGTILIAKAV EGHDQLVEVD LSTNMIRRAG ARALAQTVVK KNTFKLLNIN GNFISEEGID EVNDMFKDCL DKLVPLDDND
501: PEGEDFEDED EEEEGEDGNE LESKLGSLKI KQGEE

Arabidopsis Description

RANGAP1RAN GTPase-activating protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LE82]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.