Subcellular Localization
min:
: max
Winner_takes_all: cytosol, nucleus, golgi
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 49.41 | 58.33 |
| GSMUA_Achr3P04120_001 | Banana | nucleus | 52.77 | 52.86 |
| Zm00001d020879_P001 | Maize | cytosol, golgi, nucleus, plastid | 22.52 | 33.42 |
| EER96942 | Sorghum | cytosol, golgi, nucleus, plastid | 30.25 | 33.21 |
| TraesCS5A01G257000.1 | Wheat | cytosol, golgi, nucleus, plastid | 29.92 | 32.66 |
| Zm00001d005997_P002 | Maize | plastid | 29.24 | 32.34 |
| TraesCS5D01G265600.1 | Wheat | nucleus | 29.92 | 32.25 |
| VIT_19s0015g01790.t01 | Wine grape | nucleus | 32.94 | 31.92 |
| TraesCS5B01G256500.1 | Wheat | cytosol, golgi, nucleus, plastid | 29.24 | 31.87 |
| HORVU5Hr1G071910.1 | Barley | nucleus | 29.24 | 31.75 |
| Os04t0471300-01 | Rice | cytosol, golgi, nucleus | 15.46 | 30.46 |
| TraesCS7D01G238200.1 | Wheat | cytosol | 27.39 | 30.35 |
| Os09t0481300-01 | Rice | nucleus | 26.72 | 30.17 |
| TraesCS7B01G135800.1 | Wheat | cytosol, golgi, nucleus | 27.06 | 29.93 |
| TraesCS7A01G240200.1 | Wheat | cytosol | 27.23 | 29.78 |
| TraesCS2B01G351300.1 | Wheat | cytosol, golgi, nucleus | 14.45 | 28.86 |
| Os08t0497900-01 | Rice | nucleus | 22.18 | 28.57 |
| Solyc07g066170.2.1 | Tomato | nucleus | 15.97 | 28.36 |
| HORVU7Hr1G048940.3 | Barley | cytosol | 26.89 | 28.02 |
| Zm00001d003334_P001 | Maize | cytosol, nucleus, plastid | 14.45 | 27.92 |
| EES14314 | Sorghum | nucleus | 23.53 | 27.67 |
| Bra039387.1-P | Field mustard | cytosol, golgi, nucleus, plastid | 18.49 | 27.5 |
| CDX94330 | Canola | nucleus | 22.69 | 27.49 |
| CDY43354 | Canola | cytosol, golgi, nucleus | 18.32 | 27.32 |
| CDX75706 | Canola | cytosol, golgi, nucleus | 19.16 | 27.14 |
| CDX89333 | Canola | nucleus | 22.35 | 26.87 |
| Bra026434.1-P | Field mustard | nucleus | 22.35 | 26.87 |
| AT4G26455.1 | Thale cress | nucleus | 22.02 | 26.79 |
| KRH62532 | Soybean | endoplasmic reticulum | 25.88 | 26.32 |
| OQU81760 | Sorghum | nucleus | 18.82 | 26.29 |
| KRH56393 | Soybean | cytosol | 25.55 | 25.89 |
| Bra001502.1-P | Field mustard | nucleus, plastid | 19.16 | 25.79 |
| CDX82542 | Canola | plastid | 18.99 | 25.51 |
| Bra002835.1-P | Field mustard | cytosol, golgi, nucleus | 11.6 | 25.0 |
| PGSC0003DMT400056956 | Potato | nucleus | 25.04 | 24.92 |
| AT5G56210.1 | Thale cress | nucleus | 21.18 | 24.75 |
| CDY24192 | Canola | plastid | 12.44 | 24.42 |
| PGSC0003DMT400022426 | Potato | nucleus | 24.03 | 24.4 |
| CDY32806 | Canola | cytosol, golgi, nucleus | 11.43 | 24.37 |
| CDY17403 | Canola | nucleus | 11.26 | 24.28 |
| HORVU2Hr1G081800.3 | Barley | cytosol, nucleus | 18.66 | 24.03 |
| AT3G13360.2 | Thale cress | extracellular, plasma membrane, vacuole | 20.5 | 23.55 |
| TraesCS2A01G331000.1 | Wheat | cytosol | 20.17 | 23.53 |
| TraesCS2D01G332000.1 | Wheat | cytosol | 20.0 | 23.33 |
| Zm00001d025667_P001 | Maize | cytosol | 18.82 | 22.95 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr4P01630_001 | EnsemblPlants:GSMUA_Achr4T01630_001 | EnsemblPlantsGene:GSMUA_Achr4G01630_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| ncoils:Coil | PANTHER:PTHR34562 | PANTHER:PTHR34562:SF1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI00029488F3 |
| UniProt:M0SK80 | MapMan:20.4.2.1.2 | : | : | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr4G01630_001]
Coordinates
chr4:+:1369895..1379552
Molecular Weight (calculated)
64566.5 Da
IEP (calculated)
4.457
GRAVY (calculated)
-0.491
Length
595 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPLSEINAE FGGELGGEEP SGIDSPIGTG GADQIWEEKG NVSPGEAAVS SPGAVKVNRD PVGGEFLAES PSNSIGSPSS AAAEVVASKL APSKGFGLKK
101: WRRIRRDLNK DITGCADTAQ ILKRRLSLAE PSKAHEDNKH KSDGEDEVEG EGSVASSVSM NIGGPPFVVA PTTLDPELGL LVTATGFNIG IESESSDDHG
201: SKSSTAASAL RLRHETVGFG RDRSRARNVI GRVPGHVVQQ RGQRAKGVRA DVKKITENQV KIEMENSYSD LQSSNVAVFC TNSMASNGKQ SEKSVNYCGE
301: QSDDAQPSVE VRSGFFKENG GIGDVLRDDL DGEYSGGENK SKSQPLSDLD PFLESIDSLQ AIKEALENEI QNFWEIGKDV LPDDYGGQYE ETEGSSSPAV
401: EVNLVEQNEK IEHLECKLGE ALAVVRAKET KILELEAVLN RTERPNKESD STDLLFFQEK CRDMETELEN LLEKKIEVEI KYTILARTTQ IWRVLEEDHI
501: ALLEEQKSPS GDQLKMMCEV ENAENKTVLS RGGAEELEKD LSAAEEVLKL QRIAYKYSLC FCVQIILLCI AFGLFLMQLF PSSSGVAPTK SSQNS
101: WRRIRRDLNK DITGCADTAQ ILKRRLSLAE PSKAHEDNKH KSDGEDEVEG EGSVASSVSM NIGGPPFVVA PTTLDPELGL LVTATGFNIG IESESSDDHG
201: SKSSTAASAL RLRHETVGFG RDRSRARNVI GRVPGHVVQQ RGQRAKGVRA DVKKITENQV KIEMENSYSD LQSSNVAVFC TNSMASNGKQ SEKSVNYCGE
301: QSDDAQPSVE VRSGFFKENG GIGDVLRDDL DGEYSGGENK SKSQPLSDLD PFLESIDSLQ AIKEALENEI QNFWEIGKDV LPDDYGGQYE ETEGSSSPAV
401: EVNLVEQNEK IEHLECKLGE ALAVVRAKET KILELEAVLN RTERPNKESD STDLLFFQEK CRDMETELEN LLEKKIEVEI KYTILARTTQ IWRVLEEDHI
501: ALLEEQKSPS GDQLKMMCEV ENAENKTVLS RGGAEELEKD LSAAEEVLKL QRIAYKYSLC FCVQIILLCI AFGLFLMQLF PSSSGVAPTK SSQNS
001: MDLESESSAL ESVDDNVLIQ QSASNVCDDG RSLDNGSCSD ESVKLLSTSN SVELGKPMSF DSPGDGGGAY SPVLKGQGLR KWRRIRRDLV KDTSANMENS
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
101: KALKRGLSGV AHSHGKQMQF QSPEVEQESQ GSVGSVNMLK SSGDGFDILG SSGYDSRFVA GVGFSAGMDL EIDDDRSSKS STVARAPKVI RYEKPMISSG
201: QGGNIRVENS KKHRGESVDF EKENSYSSLE SDSRKQSGRM MDYNGENGET SMRKDDAGGE GGESINTDNR YSDEMDPLTE AINGFLALQD ALEKEVQQFQ
301: EIGNEPMPQH HEQVSEANSP HPEIVTLVNN VEQLENMLEE TRSMLEVKES HIRDLESTTN QSKHSWGGTE IVVEDIFRQK IEAEIEYLIY SRSIDNLNSQ
401: MKLIDEQESL AEEQTHETLN KLGRVQTKAA NFTNRAQDLQ NDCIEITGTI KKRACKITSY VLIQLVLLST VVLLLLSQLL PEPDTVVPT
Arabidopsis Description
WIP1WPP domain-interacting protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXA4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.