Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- extracellular 7
- endoplasmic reticulum 5
- vacuole 5
- plasma membrane 6
- golgi 6
- nucleus 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | extracellular | 76.83 | 76.83 |
| CDY53255 | Canola | extracellular | 51.22 | 53.16 |
| AT5G18150.1 | Thale cress | extracellular | 48.78 | 52.63 |
| CDY38491 | Canola | extracellular | 47.56 | 50.0 |
| KRH70160 | Soybean | extracellular | 51.22 | 48.84 |
| Bra002138.1-P | Field mustard | extracellular | 48.78 | 48.78 |
| Bra023476.1-P | Field mustard | extracellular | 43.9 | 48.65 |
| CDY25454 | Canola | extracellular | 47.56 | 47.56 |
| Bra006442.1-P | Field mustard | extracellular | 47.56 | 47.56 |
| Bra023477.1-P | Field mustard | extracellular | 42.68 | 47.3 |
| CDX85592 | Canola | extracellular | 42.68 | 47.3 |
| KRH08496 | Soybean | extracellular | 48.78 | 45.98 |
| CDX70798 | Canola | extracellular | 46.34 | 45.78 |
| CDX78780 | Canola | extracellular | 46.34 | 45.78 |
| CDX91042 | Canola | extracellular | 41.46 | 44.16 |
| VIT_08s0007g07390.t01 | Wine grape | extracellular | 47.56 | 43.82 |
| AT5G14602.1 | Thale cress | extracellular | 42.68 | 43.75 |
| KRG94827 | Soybean | endoplasmic reticulum, extracellular | 40.24 | 40.74 |
| VIT_11s0149g00310.t01 | Wine grape | extracellular | 42.68 | 39.77 |
| KRH06709 | Soybean | endoplasmic reticulum, extracellular | 40.24 | 37.93 |
| Solyc06g075190.1.1 | Tomato | extracellular | 43.9 | 37.89 |
| PGSC0003DMT400008688 | Potato | extracellular | 42.68 | 36.84 |
| GSMUA_Achr11P... | Banana | extracellular | 36.59 | 35.71 |
| GSMUA_Achr7P22160_001 | Banana | extracellular | 36.59 | 34.48 |
| GSMUA_Achr11P... | Banana | extracellular | 35.37 | 33.72 |
| CDX91043 | Canola | extracellular | 36.59 | 32.61 |
| GSMUA_Achr4P00210_001 | Banana | extracellular | 34.15 | 32.18 |
| CDY02643 | Canola | cytosol, golgi, nucleus | 43.9 | 29.51 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P11540_001 | EnsemblPlants:GSMUA_Achr6T11540_001 | EnsemblPlantsGene:GSMUA_Achr6G11540_001 | PANTHER:PTHR34132 | PANTHER:PTHR34132:SF5 | SEG:seg |
| SignalP:SignalP-noTM | UniParc:UPI000295C714 | UniProt:M0T652 | MapMan:35.2 | : | : |
Description
Putative expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G11540_001]
Coordinates
chr6:-:7651485..7652220
Molecular Weight (calculated)
8990.0 Da
IEP (calculated)
9.831
GRAVY (calculated)
0.157
Length
82 amino acids
Sequence
(BLAST)
(BLAST)
1: MCPLRLVLVF LSAALAGFFA WKSIRSPPPS PISDDSQEVG ASLGDSSIKG RILGAGKVIE NGYWVFLDMA SGRYLWRAMK ER
1: MCPMRFLLVF FSAVLAGYFA WKTVSSSPEF DSPDELNEKQ ELNLKKKMEN GFWVFVDMAS GRYLWRNLKE MREKSQ
Arabidopsis Description
Emb [Source:UniProtKB/TrEMBL;Acc:Q9FK55]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.