Factsheet for Bra006442.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 7
endoplasmic reticulum 5
vacuole 5
plasma membrane 6
golgi 5
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	plasma membrane, plastid
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra003423.1-P
Bra004527.1-P
Bra007547.1-P
Bra014481.1-P
Bra030034.1-P
Bra032817.1-P
Bra039275.1-P
Bra039276.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G18150.1	Bra030034.1-P	AT1G27300.1	21798944
AT5G18150.1	Bra032817.1-P	AT1G27300.1	21798944
AT5G18150.1	Bra004527.1-P	AT2G46550.1	21798944
AT5G18150.1	Bra039275.1-P	AT2G46550.1	21798944
AT5G18150.1	Bra039276.1-P	AT2G46550.1	21798944
AT5G18150.1	Bra003423.1-P	AT3G60600.1	21798944
AT5G18150.1	Bra007547.1-P	AT3G60600.1	21798944
AT5G18150.1	Bra014481.1-P	AT3G60600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78780	Canola	extracellular	98.78	97.59
CDX70798	Canola	extracellular	93.9	92.77
Bra002138.1-P	Field mustard	extracellular	82.93	82.93
AT5G18150.1	Thale cress	extracellular	74.39	80.26
Bra023476.1-P	Field mustard	extracellular	64.63	71.62
Bra023477.1-P	Field mustard	extracellular	63.41	70.27
KRH70160	Soybean	extracellular	58.54	55.81
VIT_11s0149g00310.t01	Wine grape	extracellular	59.76	55.68
KRH08496	Soybean	extracellular	58.54	55.17
VIT_08s0007g07390.t01	Wine grape	extracellular	59.76	55.06
KRG94827	Soybean	endoplasmic reticulum, extracellular	52.44	53.09
GSMUA_Achr10P...	Banana	extracellular	50.0	50.0
Solyc06g075190.1.1	Tomato	extracellular	56.1	48.42
KRH06709	Soybean	endoplasmic reticulum, extracellular	51.22	48.28
GSMUA_Achr6P11540_001	Banana	extracellular	47.56	47.56
PGSC0003DMT400008688	Potato	extracellular	54.88	47.37
Bra006770.1-P	Field mustard	extracellular	43.9	41.86
Bra002655.1-P	Field mustard	extracellular	42.68	40.23

Protein Annotations

EnsemblPlants:Bra006442.1	EnsemblPlants:Bra006442.1-P	EnsemblPlantsGene:Bra006442	PANTHER:PTHR34132	PANTHER:PTHR34132:SF1	SEG:seg
SignalP:SignalP-noTM	UniParc:UPI000253FE56	UniProt:M4CQF3	MapMan:35.2	:	:

Description

AT5G18150 (E=3e-025) | unknown protein

Coordinates

chrA03:-:3501818..3502145

Molecular Weight (calculated)

9390.5 Da

IEP (calculated)

8.200

GRAVY (calculated)

0.065

Length

82 amino acids

Sequence
(BLAST)

1: MCPLRFLLVF FSAVLAGYFA WKTVSSSPEI ISDDDDGSPV ELNEKQGLCF KKKMEKGFWV FVDMASGKYL WRNLKLMSEK AI

Best Arabidopsis Sequence Match ( AT5G18150.1 )
(BLAST)

1: MCPMRFLLVF FSAVLAGYFA WKTVSSSPEF DSPDELNEKQ ELNLKKKMEN GFWVFVDMAS GRYLWRNLKE MREKSQ

Arabidopsis Description

Emb [Source:UniProtKB/TrEMBL;Acc:Q9FK55]
SUBAcon: [extracellular]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.