Factsheet for Bra039275.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000680.1-P
Bra001003.1-P
Bra007528.1-P
Bra014494.1-P
Bra022748.1-P
Bra036122.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	Bra036122.1-P	AT1G54770.1	21798944
AT2G46550.1	Bra001003.1-P	AT3G01550.1	21798944
AT2G46550.1	Bra007528.1-P	AT3G60360.1	21798944
AT2G46550.1	Bra014494.1-P	AT3G60360.1	21798944
AT2G46550.1	Bra000680.1-P	AT4G09460.1	21798944
AT2G46550.1	Bra022748.1-P	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039276.1-P	Field mustard	nucleus	95.53	50.44
CDY61731	Canola	nucleus	78.77	45.05
AT2G46550.1	Thale cress	nucleus, plastid	56.42	25.44
Bra004527.1-P	Field mustard	nucleus, plastid	51.96	23.91
Bra033275.1-P	Field mustard	mitochondrion	31.28	18.36
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	41.34	15.48
KRG97204	Soybean	nucleus	35.75	15.02
Bra032629.1-P	Field mustard	mitochondrion	27.93	14.79
KRH68927	Soybean	nucleus	35.2	14.79
KRH47890	Soybean	cytosol, mitochondrion	33.52	13.51
KRH06447	Soybean	cytosol, mitochondrion	33.52	13.48
Os08t0400300-01	Rice	nucleus	31.84	11.85
Zm00001d020233_P001	Maize	mitochondrion	30.73	11.8
KXG35486	Sorghum	cytosol, mitochondrion, nucleus, plasma membrane	30.73	11.73
Zm00001d032283_P004	Maize	mitochondrion	31.28	11.69
EES13800	Sorghum	mitochondrion	29.61	11.06
Zm00001d005653_P001	Maize	nucleus	28.49	10.94
TraesCS5D01G198100.1	Wheat	cytosol, mitochondrion	28.49	10.9
HORVU5Hr1G057510.3	Barley	cytosol, mitochondrion	27.93	10.8
TraesCS5B01G190300.1	Wheat	cytosol, mitochondrion	27.93	10.73
TraesCS5A01G194900.2	Wheat	cytosol, mitochondrion	28.49	10.67
Os09t0363500-01	Rice	mitochondrion	26.82	10.37
GSMUA_AchrUn_...	Banana	cytosol	11.17	8.51
PGSC0003DMT400047670	Potato	nucleus	15.64	6.88
Solyc03g083000.2.1	Tomato	nucleus	15.08	6.65

Protein Annotations

EnsemblPlants:Bra039275.1	EnsemblPlants:Bra039275.1-P	EnsemblPlantsGene:Bra039275	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	SEG:seg
UniParc:UPI0002544637	UniProt:M4FDV4	MapMan:35.2	:	:	:

Description

AT2G46550 (E=1e-030) | unknown protein

Coordinates

chrA04:-:18781738..18782277

Molecular Weight (calculated)

20043.1 Da

IEP (calculated)

6.513

GRAVY (calculated)

-0.859

Length

179 amino acids

Sequence
(BLAST)

001: MAGGEARAVW QRTVNRYLVQ EDAKRAPKFT SSHSSSSSSS TTKQVQEDSV SSPPVVHSHN QSAFMPLDYP QLLDHHPHHL HVKTPLEAEV NISEKKPELG
101: AKETRESYGS FGKDESSEIP FDPSSPWNPL SSEKAGPWWR TTDKDELASL VAQRSLDFFV ENCDLPTPQK MKRSSYGFS

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.