Factsheet for GSMUA_AchrUn_randomP11270_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr2P20600_001
GSMUA_Achr3P22200_001
GSMUA_Achr4P04810_001
GSMUA_Achr5P01180_001
GSMUA_Achr5P02030_001
GSMUA_Achr5P17010_001
GSMUA_Achr5P26000_001
GSMUA_Achr6P07260_001
GSMUA_Achr6P12930_001
GSMUA_Achr6P16380_001
GSMUA_Achr6P25420_001
GSMUA_Achr6P32500_001
GSMUA_Achr8P32480_001
GSMUA_Achr9P08600_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	GSMUA_Achr5P02030_001	AT1G54770.1	21798944
AT2G46550.1	GSMUA_Achr4P04810_001	AT3G60360.1	21798944
AT2G46550.1	GSMUA_Achr6P32500_001	AT3G60360.1	21798944
AT2G46550.1	GSMUA_Achr10P...	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr10P...	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr2P20600_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr3P22200_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr5P01180_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr5P17010_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr5P26000_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr6P07260_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr6P12930_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr6P25420_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr8P32480_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr9P08600_001	AT4G09460.1	21798944
AT2G46550.1	GSMUA_AchrUn_...	AT4G09460.1	21798944
AT2G46550.1	GSMUA_Achr10P...	AT5G51010.1	21798944
AT2G46550.1	GSMUA_Achr6P16380_001	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039275.1-P	Field mustard	nucleus	8.51	11.17
GSMUA_Achr3P32190_001	Banana	mitochondrion, nucleus	18.3	10.83
CDX85174	Canola	nucleus	8.94	10.29
CDY68438	Canola	nucleus	2.55	9.52
CDX99425	Canola	nucleus	2.55	9.52
KRG97204	Soybean	nucleus	17.02	9.39
KRH68927	Soybean	nucleus	17.02	9.39
VIT_15s0046g00260.t01	Wine grape	mitochondrion, nucleus	18.3	9.0
Bra033275.1-P	Field mustard	mitochondrion	11.49	8.85
GSMUA_Achr4P09100_001	Banana	cytosol	17.87	8.77
PGSC0003DMT400000655	Potato	mitochondrion	17.45	8.72
CDY61731	Canola	nucleus	11.49	8.63
AT1G01240.3	Thale cress	mitochondrion	11.91	8.46
Solyc01g096100.2.1	Tomato	nucleus	17.02	8.44
CDX90019	Canola	mitochondrion	11.91	8.36
KRH47890	Soybean	cytosol, mitochondrion	15.74	8.33
KRH06447	Soybean	cytosol, mitochondrion	15.74	8.31
Bra039276.1-P	Field mustard	nucleus	11.91	8.26
CDY27317	Canola	nucleus	11.06	8.0
Bra032629.1-P	Field mustard	mitochondrion	11.49	7.99
CDX80028	Canola	nucleus, plastid	13.19	7.97
Bra004527.1-P	Field mustard	nucleus, plastid	13.19	7.97
CDY38000	Canola	mitochondrion	11.49	7.94
CDY15190	Canola	mitochondrion	10.21	7.72
AT2G46550.1	Thale cress	nucleus, plastid	12.34	7.3
CDY56879	Canola	nucleus	11.49	6.92
GSMUA_Achr7P24360_001	Banana	nucleus	4.26	6.1

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP11270_001	EnsemblPlants:GSMUA_AchrUn_randomT11270_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG11270_001	PANTHER:PTHR33868	PANTHER:PTHR33868:SF1	UniParc:UPI00029624E6
UniProt:M0U886	MapMan:35.2	:	:	:	:

Description

Hypothetical protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG11270_001]

Coordinates

chrchrUn_random:+:54160484..54161191

Molecular Weight (calculated)

26262.0 Da

IEP (calculated)

8.194

GRAVY (calculated)

-0.219

Length

235 amino acids

Sequence
(BLAST)

001: MEATESRPAR QRIASRCLVQ EDAEGAPRLA CCPSYTSVNI LGYENTAIAQ DYHVPEFMPS NRNPMNPNLS PETKGRLQLQ PIVGCLKDFT CEQLSSIEWE
101: VIEKYTETAV PTSKLDGGGG SLPVNFIKFV LKREDLVSTA SMKSGSGTSV KEMNTTTIYS QQPLKQQTNM DFVYKVEKLL DLKPVDLKRL GLGVISLRDG
201: GILQIKMIWL CWLPKNHCSI LKIVICPNPP RQFII

Best Arabidopsis Sequence Match ( AT1G01240.2 )
(BLAST)

001: MGAAEARALW QRTASRCFVV HEDAKMAPRL ACCQHQQSSS GNTEKNSFSS GSFGDSSDFS CDTKWWLKGS TGFDEEVTNS FLEDTKCKKL HEFVDLIGIR
101: EEEDYSFISK KADATTPWWR STTDKDELAL MVATKSVDHN IQNCDLPPPQ KLHKSIHSSS GEKGFKTAVK SPWKQGVWKD RFERSLSYNG STESKNTSPM
201: SSPRSDDLSK GQLLEALRHS QTRAREAERA AREACAEKDR VITILLKQAS QMLAYKQWLK LLEMEALYLQ MKKEEEQEEQ VKGMNLKKRK QRGEKKKKGE
301: TGRYMMAFAL GFSLIGAGLL LGWTVGWLLP F

Arabidopsis Description

At1g01240/F6F3_11 [Source:UniProtKB/TrEMBL;Acc:Q9LNJ7]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.