Factsheet for VIT_15s0046g00260.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 1
nucleus 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_05s0020g00780.t01
VIT_08s0056g00160.t01
VIT_14s0066g01000.t01
VIT_17s0000g00110.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G46550.1	VIT_05s0020g00780.t01	AT1G54770.1	21798944
AT2G46550.1	VIT_14s0066g01000.t01	AT3G01550.1	21798944
AT2G46550.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT2G46550.1	VIT_17s0000g00110.t01	AT5G51010.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68927	Soybean	nucleus	48.12	53.99
KRG97204	Soybean	nucleus	47.07	52.82
KRH47890	Soybean	cytosol, mitochondrion	45.19	48.65
KRH06447	Soybean	cytosol, mitochondrion	43.31	46.52
Solyc01g096100.2.1	Tomato	nucleus	44.56	44.94
PGSC0003DMT400000655	Potato	mitochondrion	43.93	44.68
CDX99425	Canola	nucleus	5.86	44.44
CDY68438	Canola	nucleus	5.86	44.44
CDY61731	Canola	nucleus	28.87	44.09
CDX85174	Canola	nucleus	18.62	43.63
Bra039276.1-P	Field mustard	nucleus	30.33	42.77
CDY27317	Canola	nucleus	28.24	41.54
Bra039275.1-P	Field mustard	nucleus	15.48	41.34
CDX90019	Canola	mitochondrion	28.87	41.19
CDY15190	Canola	mitochondrion	26.78	41.16
AT2G46550.1	Thale cress	nucleus, plastid	33.89	40.81
AT1G01240.3	Thale cress	mitochondrion	28.24	40.79
CDY56879	Canola	nucleus	31.38	38.46
VIT_16s0098g01690.t01	Wine grape	nucleus, plastid	40.59	38.19
Bra032629.1-P	Field mustard	mitochondrion	26.99	38.17
CDX80028	Canola	nucleus, plastid	30.96	38.05
Bra004527.1-P	Field mustard	nucleus, plastid	30.96	38.05
CDY38000	Canola	mitochondrion	26.99	37.94
Bra033275.1-P	Field mustard	mitochondrion	21.55	33.77
GSMUA_AchrUn_...	Banana	cytosol	9.0	18.3

Protein Annotations

EntrezGene:100260339	wikigene:100260339	MapMan:35.2	ProteinID:CCB62550	ProteinID:CCB62550.1	ncoils:Coil
UniProt:F6I6F4	EMBL:FN596755	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	EntrezGene:LOC100260339
wikigene:LOC100260339	PANTHER:PTHR33868	PANTHER:PTHR33868:SF2	TIGR:TC58958	TMHMM:TMhelix	UniParc:UPI00019862BA
ArrayExpress:VIT_15s0046g00260	EnsemblPlantsGene:VIT_15s0046g00260	EnsemblPlants:VIT_15s0046g00260.t01	unigene:Vvi.1666	RefSeq:XP_002265230	RefSeq:XP_002265230.1
RefSeq:XP_019081153.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr15:+:17282514..17286012

Molecular Weight (calculated)

53186.1 Da

IEP (calculated)

6.707

GRAVY (calculated)

-0.683

Length

478 amino acids

Sequence
(BLAST)

001: MAAAEARAVW QRAANRCFVQ EDAKRAPKLA CCPSSSSSSK QADAGHANAA DGPDHPPVGF MPLNRTSYSN LPPDTRWWLQ LQPNYGYQKG LTSEQLNALE
101: AEVEMLIDGT ASKTSELDGA YAQNEDGSGR VDGGKNTESF FDVDNINFAG CVEKDPDFGK QEVNALDSKN AQDLEVNNMW KYYELVETEP IGSSASKQPS
201: ELYLDSESSW IGVEKNEPWW RTADTDELAS LVVQKSLDHI ENCDLPPPQK MHVRSDPFAP LGSFVHKGNF GSSLDRKAQT GTLSNLTLHL KGSSSLGSAD
301: GRQWASAEDR HGSDKPFSYN TNHKDLTEMQ GITDNDPSKA QLLEALRHSQ TRAREAEKAA KQAHEEKEHI ISLFLRQASQ LFAYKQWFHL LQLENLYSQI
401: KNKDHPISTL FPVTLPWTPY KAKKQRKSWQ KATKGRRGKR AQPRYDISKY AVAFALGLSL VGAGLLLGWT IGWMLPTL

Best Arabidopsis Sequence Match ( AT2G46550.1 )
(BLAST)

001: MAAAEARAVW QRTVNRCFVQ EDAKRAPKLT YCQSSSSSTA SSTKQVEVSG SSPRVSVEPR TQSSCAGFMP LPRNPNFPDL LPHNTRLWSH PHHQFQVNKK
101: QPLEDEVNNQ GVSEKKSELG AGEKQGKSFN SESFQEFIEL METRESYGST GYDESSEKKL SELSFDPSSP WNLLSSEKAA PWWRTTDKDE LASLVAQRSL
201: DYVENCDLPT PQKMKRSYYG SPRGFDSDGL RDYSVSGQTI KGTSKGSSCK NRPEASSESD LSKSELLEAL RRSQTRAREA ENMAKEAYAE KEHLVKILLK
301: QAAELFGYKQ WLQLLQLEAL YLQIKNKEID NKNNDDPGVS IPCWSNGKAR KEGRKRRSKR GKPNGAKYAV GLALGMSLVG AGLLLGWTVG WMQMLSF

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZPY4]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.